We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6NCS | 2018 | 0 |
| 5VO7 | 2017 | 0 |
| 5VN6 | 2017 | 0 |
| 6NBM | 2019 | 0 |
| 6UCZ | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 5VJY | 2017 | 0 |
| 6UDG | 2019 | 0 |
| 6UH2 | 2019 | 0 |
| 6UHW | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3qh8 | 3sbx | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25328 | Deciphering common recognition principles of nucleoside mono/di and triphosphates binding in diverse proteins via structural matching of their binding sites | 2017 | R Bhagavat, N Srinivasan- Proteins: Structure, 2017 - Wiley Online Library | One highest resolution structure was taken as the representative for each site architecture or BScID type Site type (ST), Representative PDB code, Cluster size, No ST19, 3T7M, 6, 6, L80 [0.86], D102, V82, T8 [0.71], LI/TR/OX/HY. ST20, 3QH8 , 6, 6, H86 [0.71], H219, D188, S18 [0.57 |
| 2 | 3iml | 3n58 | http://mbio.asm.org/content/2/3/e00051-11.short | Identification and Characterization of the Chlamydia trachomatis L2 S-Adenosylmethionine Transporter | 2011 | R Binet, RE Fernandez, DJ Fisher, AT Maurelli - mBio, 2011 - Am Soc Microbiol | ... The alignment was generated using the Tcoffee expresso Web server using Arabidopsis thaliana MAT1 sequence (P23686) and the tertiary sequence of rat MAT1 (PDB ID 1O9T), E. coli MAT (PDB ID 1XRC) and Burkholderia pseudomallei MAT (PDB ID 3IML). ... |
| 3 | 3khp | - | http://scripts.iucr.org/cgi-bin/paper?rl5046 | Cloning, overexpression, purification, crystallization and preliminary X-ray diffraction analysis of Rv0241c (HtdX) from Mycobacterium tuberculosis H37Rv | 2013 | R Biswas, D Dutta, AK Das - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... PDB entry, Identity (%), Query cover (%), Reference. 1pn2, 47, 10, Koski et al. (2004 [Koski, MK, Haapalainen, AM, Hiltunen, JK & Glumoff, T. (2004). ... F66, 272-274.] ). 3khp, 36, 19, Seattle Structural Genomics Center for Infectious Disease (unpublished work). 3oml, 33, 37, Haataja ... |
| 4 | 2khp | - | https://etd.ohiolink.edu/!etd.send_file?accession=akron1460988438&disposition=at... | Identifying selective ligands for glutaredoxin proteins with fragment based drug design approach and optimization of the bacterial selective hits | 2016 | RB Khattri - 2016 - etd.ohiolink.edu | ...These were compared to structures deposited in the Protein Data Bank (RCSB PDB). The PBD name for the BrmGRX is 2KHP (Leeper et. al, 2011) and hGRX1 is 1JHB (Sun et. al, 1998).. ... |
| 5 | 2khp | - | http://www.mdpi.com/1420-3049/21/7/846/htm | An NMR-guided screening method for selective fragment docking and synthesis of a warhead inhibitor | 2016 | RB Khattri, DL Morris, CM Davis, SM Bilinovich - Molecules, 2016 - mdpi.com | ... The active site architecture of BrmGRX matches with the proposed GRX consensus active sitestructure which suggests the N ... Structures of target proteins were obtained from the Protein DataBank (PDB) [63]. The PBD code for BrmGRX is 2KHP and hGRX1 is 1JHB [19,64]. ... |
| 6 | 2khp | - | https://www.mdpi.com/1420-3049/25/1/147 | Identifying Ortholog Selective Fragment Molecules for Bacterial Glutaredoxins by NMR and Affinity Enhancement by Modification with an Acrylamide Warhead | 2020 | RB Khattri, DL Morris, SM Bilinovich, E Manandhar- Molecules, 2020 - mdpi.com | between the two domains, the presence of multiple paralogs in one or both species, and a lack of conserved genomic architecture between the Structural comparison of hGRX1 to E. coli GRX and BrmGRX indicated similarities in the overall fold and structure ... NMR backbone resonance assignments for BrmGRX (2KHP) and hGRX1 (1JHB) were obtained from the BMRB |
| 7 | 3ue9 | - | http://scholar.google.com/https://espace.library.uq.edu.au/view/UQ:409815/s41770... | Disruption of de novo ATP biosynthesis abolishes virulence in Cryptococcus neoformans | 2016 | R Blundell - 2016 - espace.library.uq.edu.au | ... pioneered the concept of rational drug design (28) which involves the use of metabolic, genetica nd structural studies to identify potential targets, followed by the directed search ... AdSS has been purified and characterized from several sources ... Crystal structures are also available for the proteins from Homo sapiens (54%, PDB ID: 2V40); Mus musculus (54%, (50, 99)) ... and Burkholderia thailandensis (40%, PDB ID: 3UE9);. ... |
| 8 | 4dz4 | - | http://repositorio.udec.cl/handle/11594/2170 | Clonamiento y anlisis funcional de la agmatinasa de ratn | 2016 | R Carrera, N Natalia - 2016 - repositorio.udec.cl | Page 1. Universidad de Concepcin Direccin de Postgrado Facultad de Ciencias Biolgicas - Programa de Magster en Bioqumica y Bioinformtica Clonamiento y anlisis funcional de la agmatinasa de ratn. Tesis para optar PDB ID: 4DZ4. X -ray crystal structure of a hypothetical Agmatinase from Burkholderia thailandensis. ... |
| 9 | 3k9w | - | http://ir.inflibnet.ac.in:8080/jspui/bitstream/10603/184372/13/13_refernces.pdf | Structural and functional characterization of type three secretion associated proteins from Yersinia enterocolitica and vitamin biosynthesis pathway proteins from | 2016 | R Chatterjee - 2016 - ir.inflibnet.ac.in | Crystal structures of homologues of SycB from PDB (SycD[2VGX], IpgC[3- GYZ], PcrH[2XCC]) showed that Consensus server of secondary structure prediction showed that SycB has 75.7% of helix and rest of Expression, Purification, Structural and Functional Analysis of SycB |
| 10 | 3k9w | - | http://www.sciencedirect.com/science/article/pii/S1570963916300607 | Transition of phosphopantetheine adenylyltransferase from catalytic to allosteric state is characterized by ternary complex formation in Pseudomonas aeruginosa | 2016 | R Chatterjee, A Mondal, A Basu, S Datta - Biochimica et Biophysica Acta ( , 2016 - Elsevier | ... 5-phosphosulfate [PDB ID: 3OTW, 3NV7] [29] and Burkholderia pseudomallei in complex withhydrolyzed dPCoA [PDB ID: 3K9W] [30]. ... was solved using PHASER [38] and by utilizing E. coliphosphopantetheine adenylyltransferase (1HIT chain A) as a starting structure. ... |