SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 4q4l - https://www.sciencedirect.com/science/article/pii/S0022283618302353 Integrating cross-linking experiments with ab initio protein-protein docking 2018 T Vreven, DK Schweppe, JD Chavez, CR Weisbrod- J Mol Biol. 2018 Jun 8;430(12):1814-1828. For the resulting complex list, we then searched the PDB for unbound structures A method for integrative structure determination of protein-protein complexes 2636. [13] Pons C, D'Abramo M, Svergun DI, Orozco M, Bernad P, Fernandez-Recio J. Structural characterization of
2 4q6u - https://www.sciencedirect.com/science/article/pii/S1369527421000102 PAS domains in bacterial signal transduction 2021 EC Stuffle, MS Johnson, KJ Watts- Current Opinion in Microbiology, 2021 - Elsevier ad) PAS monomer structures : (a) The PAS structural prototype photoactive dimer bound to heme cofactor (Fe 3+ , PDB : 4HI4, [25]) and a liganded monomer with cyanomet heme (Fe 3+ -CN, PDB : 3VOL, [31 For clarity, b-type heme is only shown bound to the liganded structure
3 4qfh - https://www.arca.fiocruz.br/handle/icict/23073 Integrao de diferentes abordagens para a avaliao de atividade antiparasitria, propriedades ADMET e alvos celulares de novas Arilimidamidas sobre 2016 CC Santos - 2016 - arca.fiocruz.br OMS Organizao Mundial de Sade PAINS Do ingls Pan-assay Interference compounds PCR Reao em cadeia da polimerase PDB Do ingls Protein Data Bank pKa Constante de ionizao de cidos Pt Pentamidina SdpS Do ingls Spermidine synthase
4 4qfh - http://repositorio.unicamp.br/handle/REPOSIP/332683 Identificao e caracterizao de inibidores da enzima glicose-6-fosfato isomerase de Leishmania mexicana 2018 SGR Mota - 2018 - repositorio.unicamp.br A computational analysis of cavities present on LmPGI crystallographic structure suggests a potential binding site for the inhibitors PBS Phosphate Buffer Solution PDB Protein Data Bank SSGCID Seattle Structural Genomics Center for Infectious Diseases
5 4qfh 4g7f, 4gie https://www.mdpi.com/2218-273X/9/9/484 Insights into Ergosterol Peroxide's Trypanocidal Activity 2019 T Meza-Menchaca, A Ramos-Ligonio- Biomolecules, 2019 - mdpi.com \To identify potential Tc proteins that might directly interact with ergosterol peroxide, an inverse-docking screening was performed on a subset of Tc protein crystallography structures.. Table 1. The best matches between T. cruzi proteins and ergosterol peroxide in descending order of ∆G predictive value ... Dihydroorotate dehydrogenase 4QFH 3W1R −9.1 −11.17 6.407
6 4qfh - http://www.sciencepubco.com/index.php/ijbas/article/view/4123 Ligand docking and binding site analysis with pymol and autodock/vina 2015 MA Rauf, S Zubair, A Azhar - International Journal of Basic and …, 2015 - sciencepubco.com ... In recent years, the process of virtual screening technique for docking small molecules into aknown protein structure is a powerful tool for drug ... Enter the name of Protein or enzyme that willbe used for docking studies (For example, Glucose 6 Phosphate or its pdb id 4QFH). ...
7 4qgr 3njd http://onlinelibrary.wiley.com/doi/10.1002/prot.25007/full Prediction of homoprotein and heteroprotein complexes by protein docking and templatebased modeling: A CASPCAPRI experiment 2016 MF Lensink, S Velankar - Proteins: Structure, , 2016 - Wiley Online Library ... Next article in Early View: Critical assessment of methods of protein structure prediction: Progressand new directions in round XI. ... E-mail: marc.lensink@univ-lille1.fr or Shoshana J. Wodak; VIBStructural Biology Research Center, VUB, 1050 Brussels, Belgium. ...
8 4qgr 4lc3 http://onlinelibrary.wiley.com/doi/10.1002/prot.25192/full Templatebased modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30 2016 H Lee, M Baek, GR Lee, S Park - Proteins: Structure, , 2016 - Wiley Online Library ... The structural similarity of oligomer templates to the experimental structure of the target (releasedafter the ... T90, 0.927/2OGA, 0.927/2OGA(0.903/4LC3), 0.921/4QGR(0.915/3B8X). ... with the givendimeric state was not available in the PDB, but a dodecamer structure (PDB ID: 3RCO ...
9 4qhq - http://www.degruyter.com/dg/justaccepted.articlelist.resultlinks.fullcontentlink... The contribution of methionine to the stability of the Escherichia coli MetNIQ ABC transporter-substrate binding protein complex. 2015 PT Nguyen, QW Li, NS Kadaba, JY Lai, JG Yang… - Biological …, 2015 - degruyter.com ... structures with PDB entries 3TQW, 3UP9, 4EF1, 4GOT, 4IB2, 4K3F, 4QHQ, 4QYM, and 4Q5T. ...2008) that was in turn solved by molecular replacement from PDB entry 1P99 (Williams et al.,2004), a Gly-Met-binding protein. ... Coordinates and structure factors have been ...
10 4qhq - https://tel.archives-ouvertes.fr/tel-02296605/ Dveloppement d'un alphabet structural intgrant la flexibilit des structures protiques 2018 I Sekhi - 2018 - tel.archives-ouvertes.fr 84 4.2.2 Architecture du site web 2.5 Comparaison de temps d'excution de SAFlex- PDB avant et aprs optimisation ensemble de conformations gomtriques reprsentatif des fragments protiques, appels lettres structurales (LS) , et destines simplifier la structure 3D d