We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SKF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 8SLF | 2023 | 0 |
| 5VN6 | 2017 | 0 |
| 5VO7 | 2017 | 0 |
| 5VPS | 2017 | 0 |
| 8SLH | 2023 | 0 |
| 8SNG | 2023 | 0 |
| 8SNJ | 2023 | 0 |
| 8SOY | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3sbx | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379747/ | Structural basis for a novel type of cytokinin-activating protein | 2017 | H Seo, KJ Kim - Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... M. marinum (MmLOG) in complex with AMP (Protein Data Bank code 3SBX) revealed the ... Therefined model of CgLOGII was deposited in the Protein Data Bank (PDB code 5WQ3 ... Thethree-dimensional structure of Lonely Guy from Claviceps purpurea provides insights into the ... |
| 2 | 3ek2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5401771/ | Rational Optimization of Diphenyl Ether Binding Kinetics to the Enoyl-ACP Reductase FabI1 from Burkholderia pseudomallei | 2017 | C Neckles, S Eltschkner, JE Cummings- Biochemistry, 2017 - ncbi.nlm.nih.gov | 35 The structures were solved by molecular replacement with Phaser 36 utilizing either the apo structure of bpFabI1 ( PDB entry 3EK2 ), or the complex structure of bpFabI1 with PT155 ( PDB entry 4BKU) as search model |
| 3 | 4dlp | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405087/ | High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis | 2017 | M Kumari, S Chandra, N Tiwari, N Subbarao - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... IV, and Methionine analogus dataset respectively. The crystal structure of MetRsBm(4DLP) was obtained from protein data bank (http://www.rcsb.org/pdb/explore.do?structureId=4DLP). The protein was prepared by removing ... |
| 4 | 4xxp | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425277/ | Placeholder factors in ribosome biogenesis: please, pave my way | 2017 | FJ Espinar-Marchena, R Babiano, J Cruz - Microbial Cell, 2017 - ncbi.nlm.nih.gov | ... As expected from this structural similarity, cryo-EM and CRAC analyses confirmed that Tsr1 binds,albeit differently than ... MDM2 fragment was taken from 4XXP 164 after superimposing the structure shown in this file with that of L11 shown in A. ... |
| 5 | 3v7o | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5472179/ | Ebola virus VP30 and nucleoprotein interactions modulate viral RNA synthesis | 2017 | W Xu, P Luthra, C Wu, J Batra, DW Leung- Nature, 2017 - ncbi.nlm.nih.gov | ... resolution data crystal forms were solved by molecular replacement using the Reston virus VP30 structure ( PDB 3V7O ) as the ... Comparison of the eVP30 structure for residues 142266 between VP30-bound and -free show limited structural changes (Supplementary Fig ... |
| 6 | 2n6x | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5511288/ | RNA structure refinement using NMR solvent accessibility data | 2017 | C Hartlmller, JC Gnther, AC Wolter, J Whnert - Scientific , 2017 - ncbi.nlm.nih.gov | ... Figure 4b ) and the corresponding sPRE values are underestimated based on the NMR solution structure , independent of which structural model of the UUCG loop motif ( PDB codes 1HLX, 1K2G, 1TLR, 1Z31, 2KHY, 2KOC, 2KZL, 2LHP, 2LUB and 2N6X ) was used. ... |
| 7 | 5bq2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512856/ | Structural insight into the binding of C60-derivatives with enoyl-pyruvate transferase from Helicobacter pylori | 2017 | M Teimouri, M Junaid, A Khan, H Zhang - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... BLAST, UDP-Nacetyl- glucosamine 1-carboxy-vinyl-transferase of Pseudomonas aeruginosa(PDB ID 5BQ2 ... The alignment of 5BQ2 and H. pylori Enoyl pyruvate transferase is given in Figure ...The modeled structure was superimposed on to the template, giving root mean square ... |
| 8 | 4dq8 | 4ijn, 3p4i, 3r9p | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517563/ | Investigation of pyrophosphate versus ATP substrate selection in the Entamoeba histolytica acetate kinase | 2017 | T Dang, C Ingram-Smith- Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... ID 3P4I; Mycobacterium paratuberculosis, PDB ID 3R9P; Mycobacterium marinum PDB ID 4DQ8 . ... ACK structures were downloaded from Protein Data Bank ( PDB ): 4H0O (Entamoeba ... Structure superposition and modeling were performed using Accelrys Discovery Studio 3.5 ... |
| 9 | 4ot8 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958214/ | Chloroplastic serine hydroxymethyltransferase from Medicago truncatula: a structural characterization | 2018 | M Ruszkowski, B Sekula, A Ruszkowska- Frontiers in plant, 2018 - ncbi.nlm.nih.gov | It is very intriguing to see that, to our best knowledge, the conformation of the γ-hydroxyl group of PLP-Ser external aldimine is unique in comparison with nearly all other SHMT complexes in the PDB (PDB IDs: 1kkp, 1yjy, 2via, 2vmp, 2vmt, 2vmw, 2w7f, 2w7k, 4ot8), except for the alternative conformation (30% occupancy) in the E53Q mutant of Geobacillus |
| 10 | 3sbx | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989583/ | Genomewide characterisation of the genetic diversity of carotenogenesis in bacteria of the order Sphingomonadales | 2018 | S Siddaramappa, V Viswanathan- Microbial, 2018 - ncbi.nlm.nih.gov | using blastp analysis and acquired from GenBank, rast or the Protein Data Bank ( PDB ) http://espript.ibcp.fr/ESPript/ESPript/) to depict similarities and secondary structure information In this context, the structural and functional similarities between different CrtI homologues need |