We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KM9 | 2021 | 2 |
| 7KMW | 2020 | 8 |
| 7KN1 | 2020 | 2 |
| 7KNA | 2021 | 15 |
| 7KNO | 2020 | 4 |
| 7KNP | 2020 | 2 |
| 7KQ6 | 2020 | 4 |
| 7KQA | 2020 | 2 |
| 7KQZ | 2020 | 0 |
| 7KVY | 2020 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4odj | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006483 | A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs) | 2018 | C Ehrt, T Brinkjost, O Koch- PLoS computational biology, 2018 - journals.plos.org | In parallel with the ever increasing number of available protein structures in the Protein Data Bank ( PDB )[1], various in silico techniques were developed to apply this structural knowledge[2]. In addition to molecular docking, structure -based pharmacophore searches, and |
| 2 | 4odj | - | http://jb.oxfordjournals.org/content/160/6/355.short | Characterization and redox regulation of Plasmodium falciparum methionine adenosyltransferase | 2016 | J Pretzel, M Gehr, M Eisenkolb, L Wang - Journal of , 2016 - Jpn Biochemical Soc | ... The structure of PfalMAT was modelled according to the crystal structures of MAT2A fromHomo sapiens (PDB no. 2p02) and Cryptosporidium hominis (PDB no. 4odj) using theSWISS-MODEL automated comparative protein-modelling server (36). ... |
| 3 | 4odj | - | https://pubs.rsc.org/en/content/articlehtml/2019/cc/c9cc07807j | Nucleoside-modified AdoMet analogues for differential methyltransferase targeting | 2020 | NV Cornelissen, F Michailidou, F Muttach- Chemical, 2020 - pubs.rsc.org | 39 In addition, we tested the putative wildtype MAT from Cryptosporidium hominis (ChMAT) that had been crystallized by the Seattle Structural Genomics Center for Infectious Disease (SSGCID) but was otherwise ChMAT ( PDB : 4ODJ ) and hMAT2a ( PDB : 5A1G) have 59 |
| 4 | 4odj | - | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc6794121/ | Genomewide analysis of mode of action of the S-adenosylmethionine analogue sinefungin in leishmania infantum | 2019 | A Bhattacharya, M Sharma, C Pakkinathan, BP Rosen- Msystems, 2019 - ncbi.nlm.nih.gov | C (B) The human LCMT1-PP2AC structure is presented SNF is a structural analogue of S-adenosylmethionine (AdoMet), a key methyl group donor to a |
| 5 | 4ohc | - | http://dspace.ncl.res.in:8080/xmlui/bitstream/handle/20.500.12252/2071/TH2183.pd... | Investigations into patterns of interactions involving sequentially neighboring amino acids in functional proteins | 2016 | M Sule - 2016 - dspace.ncl.res.in | Figure 6. The alpha helix in PDB : 3KB9 with the side chain hydrogen bonding pattern between While most motifs comprise primarily of regular secondary structures such as -helices or -sheets, the regions connecting these structural elements are irregular structure elements |
| 6 | 4ohc | - | https://pubs.acs.org/doi/abs/10.1021/acscatal.9b05294 | Elucidating the Catalytic Reaction Mechanism of Orotate Phosphoribosyltransferase by means of X-ray Crystallography and Computational Simulations | 2020 | M Roca, S Navas-Yuste, K Zinovjev- ACS, 2020 - ACS Publications | Then, the dimeric architecture of OPRTase plays an essential role in the catalysis since The coordinates and structure factors have been deposited in the Protein Data Bank ( PDB ) with accession codes 6TAI (EcOPRT), 6TAJ (EcOPRT/OA) and 6TAK (EcOPRT/OA/SO4 2-). 2.5 |
| 7 | 4ohc | - | http://bq.facmed.unam.mx/tab/wp-content/uploads/2020/06/9-Gonzalez-Segura.pdf | Orotato fosforribosiltransferasa. Pasado, presente y futuro en el estudio estructural de las protenas. | 2020 | L Gonzlez-Segura, EI Carrizosa-Carbajal - bq.facmed.unam.mx | Past, present and future in the structural study of proteins Key words: Phosphoribosyltransferase; three- dimensional structure ; conformational change; inhibition; pyrimidines synthesis str (PDBs 3M3H y 4RV4), de Burkholderia cenocepacia ( PDB 4OHC ), de Corynebacterium |
| 8 | 4oj7 | - | http://www.repositorio.ufop.br/handle/123456789/8872 | Identificao de protenas exclusivas de fitopatgenos da famlia Xanthomonadaceae: uso de genmica comparativa para identificao de novos alvos de combate. | 2016 | RAB Assis - 2016 - repositorio.ufop.br | Pro Prolina Ser Serina Thr Treonina Phe Fenilalanina Trp Triptofano Tyr Tirosina CAZy Carbohydrate active enzyme PDB Protein Data Bank Page 14. X RESUMO A famlia Xanthomonadaceae compreende espcies diferentes de proteobactrias no |
| 9 | 4oj7 | - | https://www.nature.com/articles/s41598-017-16325-1 | Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the | 2017 | R de AB Assis, LC Polloni, JSL Patan, S Thakur- Scientific reports, 2017 - nature.com | Based on this functional analogy, we performed a detailed in silico analysis of the CM-sec three-dimensional (3D) structure. The hit in the structural analysis was from Burkholderia thailandensis (PDB 4oj7.1.A) with 98.2% coverage and 39.74% identity, confirming the typical CM domain fold |
| 10 | 4ol9 | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.5b00174 | Evidence of kinetic cooperativity in dimeric ketopantoate reductase from Staphylococcus aureus. | 2015 | JE Sanchez, PG Gross, RW Goetze, RM Walsh… - Biochemistry, 2015 - ACS Publications | ... the dimeric assembly of S. aureus KPR is conserved in the enzymes from Ralstonia eutropha, Ralstonia solanacearum, Mycobacterium tuberculosis, Enterococcus faecalis, Methylococcus capsulatus, and Bacillus subtilis (PDB entries 3HWR, 3GHY, 4OL9, 2EW2, 3I83, and 3EGO, respectively), despite low sequence identity ranging from 20−31% ... |