We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5TP4 | 2017 | 0 |
| 8SBV | 2023 | 0 |
| 5TR9 | 2016 | 0 |
| 8SBX | 2023 | 0 |
| 5TT1 | 2016 | 0 |
| 5TVK | 2016 | 0 |
| 5U1P | 2016 | 0 |
| 8SBY | 2023 | 0 |
| 8SBZ | 2023 | 0 |
| 5U2A | 2016 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4nbr | - | https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bio... | SCOT: Rethinking the Classification of Secondary Structure Elements | 2019 | T Brinkjost, C Ehrt, O Koch, P Mutzel- Bioinformatics, 2019 - academic.oup.com | -bulge which leads to a kinked (highlighted in green) -helical structure in 4nbr @ pdb (chain A for SCOT and SHAFT for the structure pair 4k20@ pdb and 5cna@ pdb results from based assignment methods except for SHAFT are the most robust ones regarding structure quality |
| 2 | 3r20 | 3r8c | https://link.springer.com/article/10.1007/s13721-019-0191-7 | Homology modeling and in silico toxicity assessment of potential inhibitors of cytidylate kinase from Mycobacterium tuberculosis | 2019 | MA Isa- Network Modeling Analysis in Health Informatics and, 2019 - Springer | Six templates ( PDB CODE: 3R20 , 3R8C, 1Q3T, 1CKE, 2CMK, and 4E22) were selected based on the An alignment of the CMK and the 3R20 revealed that their structures share a 74.0 Ten structural models of CMK were generated, and the structure with the least DOPE and fold |
| 3 | 3uam | - | https://www.sciencedirect.com/science/article/pii/S1093326318306776 | Structural dynamics of lytic polysaccharide monoxygenases reveals a highly flexible substrate binding region | 2019 | R Arora, P Bharval, S Sarswati, TZ Sen- Journal of Molecular, 2019 - Elsevier | pdb ) id: 2vtc, 2yet, 3zud, 4b5q, 4eir, 4qi8, 5acf, 5aci, 5acj, 5foh, 5tkf, 5tkg, 5tkh, and 5tki) and 10 structures in AA10 ( pdb id: 2bem, 3uam , 4ow5, 4oy6 MSF correlation value of 0.58 or higher (Table 1). In the case of AA11 and AA13 there was only one structure , 4mah and 5t7j |
| 4 | 3u5w | - | https://www.sciencedirect.com/science/article/pii/S1047847719300516 | The crystal structure of Rv2991 from Mycobacterium tuberculosis: An F420 binding protein with unknown function | 2019 | S Benini, A Haouz, F Proux, P Alzari- Journal of structural biology, 2019 - Elsevier | from M. tuberculosis in complex with F 420 (Ahmed et al., 2016); 3U5W uncharacterized protein of secondary structural elements of the query (Rv2991) that match the target structure by the sequence similarity search by BLASTp when Rv2991was compared to the whole PDB |
| 5 | 3dah | - | https://bmcstructbiol.biomedcentral.com/articles/10.1186/s12900-019-0100-4 | Crystal structure of E. coli PRPP synthetase | 2019 | W Zhou, A Tsai, DA Dattmore- Structural, 2019 - bmcstructbiol.biomedcentral.com | Overall, this study details key structural features of an enzyme that catalyzes a critical step in nucleotide metabolism The structure was solved by molecular replacement using the PRPP synthetase from Burkholderia pseudomallei ( PDB 3DAH ) as the search model [14] |
| 6 | 5ts2 | 3pxu | https://www.sciencedirect.com/science/article/pii/S0141813019351451 | Structural and biochemical studies of phosphopantetheine adenylyltransferase from Acinetobacter baumannii with dephospho-coenzyme A and coenzyme A | 2019 | A Gupta, PK Singh, P Sharma, P Kaur, S Sharma- International journal of, 2019 - Elsevier | pseudolamelli (BpPPAT, PDB ID: 3PXU), Mycobacterium abcessus (MaPPAT, PDB ID: 5O08) and Pseudomonas aeruginosa (PaPPAT, PDB ID: 5TS2 Therefore, structure of enzyme, PPAT must be determined from the bacterium against whom specific drug has to be designed |
| 7 | 5b8h | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/cmdc.201800652 | Identification of Specific and Nonspecific Inhibitors of Bacillus anthracis TypeIII Pantothenate Kinase (PanK) | 2019 | JA Shapiro, JJ Varga, D Parsonage, W Walton- , 2019 - Wiley Online Library | Organic synthesis of analogues along with biochemical validation of the proposed mechanism will allow structure function analysis and form 2H3G, DOI: 10.2210/pdb2H3G/ pdb ), PaPanK ( PDB ID: 2F9T, DOI: 10.2210/pdb2F9T/ pdb ), and BcPanK ( PDB ID: 5B8H , DOI: 10.2210 |
| 8 | 4l82 | - | https://www.sciencedirect.com/science/article/pii/S2405844019358530 | Simulation-based protein engineering of R. erythropolis FMN oxidoreductase (DszD) | 2019 | R Fallahzadeh, B Bambai, K Esfahani, AA Sepahi- Heliyon, 2019 - Elsevier | their PDB information, the multiple alignments of these 22 PDB files was done with the DszD. pdb (Fig 1. Predicted three dimensional structure for wild-type DszD enzyme residues (Asn or Ile residue instead of Ala79) were presented on the 3K88 and 4L82 homologous proteins |
| 9 | 5unb | - | https://ora.ox.ac.uk/objects/uuid:bd3dc30e-2835-45d8-b1ba-dafa2f552e98/download_... | Janus kinase inhibition for autoinflammation in DNASE2 deficiency | 2019 | S Nanthapisal, A Cavounidis, H Takeshita- Journal of Allergy and, 2019 - ora.ox.ac.uk | Structural modeling Structural models and figures were prepared by using the ICM software package (MolSoft, San Diego, Calif). A homology model for human DNase II was prepared by using the existing structure from B thailandensis ( PDB 5UNB ) as the model template |
| 10 | 3sbx | - | https://www.nature.com/articles/s41598-019-53171-9 | A LONELY GUY protein of Bordetella pertussis with unique features is related to oxidative stress | 2019 | F Moramarco, A Pezzicoli, L Salvini, R Leuzzi- Scientific reports, 2019 - nature.com | first resorted to a theoretical approach. This involved overlapping a model of BP1253 with a monomer of the type-I LOG protein of M. marinum co-crystallized with AMP (MmLOG, PDB 3SBX ) 14,19 . BP1253 was modeled on a |