We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SQO | 2023 | 0 |
| 8SQP | 2023 | 0 |
| 6ANZ | 2017 | 0 |
| 6AP5 | 2017 | 0 |
| 6AQ3 | 2017 | 0 |
| 8SQQ | 2023 | 0 |
| 6AQH | 2017 | 0 |
| 6AQY | 2017 | 0 |
| 8SQR | 2023 | 0 |
| 8SQT | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3sth | - | http://search.proquest.com/openview/1229867efa30e82724b2b406c14ae6d7/1?pq-origsi... | Deciphering the mechanism and function of stage-specific protein association with the membrane cytoskeleton of Toxoplasma gondii | 2017 | R Dubey - 2017 - search.proquest.com | Crystal structure data of TgGAPDH1 Crystal structure data collection and refinement statistics of Toxoplasma GAPDH1, PDB code 3STH Crystallographic structures of the seven selected GAPDH proteins are solved and deposited in PDB . 62 Structure of TgGAPDH1 protein |
| 2 | 3h81 | 3swx, 3oc7, 3myb, 4g7f, 4je1, 3moy, 3p5m, 4di1, 3pe8, 3trr, 3tlf, 3rsi, 3rrv, 3njb, 3ome, 3p85, 3n5o, 3q1t, 4hdt, 3t3w, 3he2, 4f82, 3lg6, 3qxi, 3qka, 3r0o, 3qxz, 3qmj, 3r6h, 3r9q, 3qre, 3r9s, 3r9t, 3qyr, 3qk8 | http://search.proquest.com/openview/0cb26ac6fdfa1ff7a54fca188db46fb4/1?pq-origsi... | Development and optimization of a clustering process that utilizes active site features to identify functionally relevant groups within protein superfamilies | 2015 | JB Leuthaeuser - 2015 - search.proquest.com | ... Key residues are identified from structural overlays ... Two protein structures of interest (3H8A blueand 2AKM purple) are aligned to a protein structure (1OEP gray ... In addition to forming ASPs, DASPcan also search the PDB and GenBank (NCBI protein) databases for proteins with ... |
| 3 | 4qtp | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Discovery of antigens for early detection of Mycobacterium avium subsp. paratuberculosis and analysis of characteristics using bioinformatics tools. | 2015 | HT Park, HE Park, MK Shin, YI Cho - Korean Journal of , 2015 - search.ebscohost.com | ... MAP MAP0380 coding anti-sigma factor antagonist protein(PDB ID: 4qtp,TM-score ... 1. Three-dimensional structure prediction using I-TASSER server. ... MAP1204p60 domain (PDB ID: 3i86, TM-score: 0.547), sequence identity 100 ... |
| 4 | 6d9y | 6d9n | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Protein secondary structure online server predictive evaluation | 2019 | - Chinese Journal of Bioinformatics, 2019 - search.ebscohost.com | 1 SPIDER Fig.1 Main structure of SPIDER 2.1 |
| 5 | 5eks | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | In-silico three dimensional structure prediction of important Neisseria meningitidis proteins. | 2021 | M Ali, M Aurongzeb, Y Rashid- Pakistan Journal of, 2021 - search.ebscohost.com | Chain A of 3-dehydroquinate Synthase from Acinetobacter Baumannii in complex with NAD+ with PDB id 5EKS (to be published) was selected as a template structure . The template had 98% query coverage and 56% sequence identity with the target sequence |
| 6 | 3q8n | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | MODELING AND DOCKING STUDIES OF 4-AMINOBUTYRATE AMINOTRANSFERASE FOR HUNTINGTON'S DISEASE. | 2011 | H Pareek, P Thakur, D Ray - International Journal of Pharma & Bio Sciences, 2011 - search.ebscohost.com | ... desired protein ie GABA-AT using a template sequence with PDB code 3Q8N. The constructed 3D models were checked for DOPE score and Ramachandran plot respectively with Modeller 9v8 and PROCHECK. Results are shown in Table 1. Model No. ... |
| 7 | 2ko7 | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Structure-based Computational analysis of Protein Binding sites for Function and Druggability in Macrophage Infectivity Potentiator (MIP) Protein of Legionella pneumophila | 2013 | CK Naidu, Y Suneetha - Current Trends in Biotechnology & Pharmacy, 2013 - search.ebscohost.com | ... with rapamycin protein (mip) (PDB ID: 2VCD) (Ceymann et al., 2008) was retrieved from the proteindata bank (PDB). ... PDB ID Protein Name ... 2KO7 Chain A Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with Cycloheximide- N ... |
| 8 | 4k6f | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Cloning, expression and molecular modeling of the anthocyanidin reductase (FaANR) gene during strawberry fruit development. | 2017 | PC Mandave, AA Kuvalekar, NL Mantri, MA Islam- Fruits, 2017 - search.ebscohost.com | respectively. Molecular docking study was performed on 3D structure of ANR obtained from homology modeling technique to check binding interaction of template molecule ( PDB ID: 4K6F ) with bound ligand (NADP). Ligand |
| 9 | 4jgb | 4jga | https://dukespace.lib.duke.edu/dspace/bitstream/handle/10161/16337/Totzke_duke_0... | Targeting Transforming Growth Factor Beta-Activated Kinase 1 as a Therapeutic | 2017 | J Totzke - 2017 - dukespace.lib.duke.edu | 50 3.4 Structural and functional similarities between TAK1 and related kinases ..... 50 Page 8. viii 4 Figure 2: Crystal structure TAK1 ( PDB 5V5N, left ribbon, right hydrophobicity surface) .... 11 |
| 10 | 5i3e | - | https://dukespace.lib.duke.edu/dspace/bitstream/handle/10161/14487/Schwabe_duke_... | Targeting Protein-Protein Interactions for Disruption of LSD1 (KDM1A) Complexes | 2017 | JL Schwabe - 2017 - dukespace.lib.duke.edu | (b) A predicted structural model generated used to determine sites of protein-protein interactions, which can be illustrated, for example, on available crystal structures in the CoREST samples were mapped onto an available LSD1/CoREST co-crystal structure ( PDB 2IW5) as a |