We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VN6 | 2017 | 0 |
| 8SLF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 9Z8K | 2025 | 0 |
| 8SKF | 2023 | 0 |
| 9Z9C | 2025 | 0 |
| 5VIX | 2017 | 0 |
| 5VC2 | 2017 | 0 |
| 5VA8 | 2017 | 0 |
| 5V77 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3he2 | - | http://www.nature.com/articles/nmicrobiol20156 | THPP target assignment reveals EchA6 as an essential fatty acid shuttle in mycobacteria | 2016 | JAG Cox, KA Abrahams, C Alemparte - Nature , 2016 - nature.com | ... Using M. tuberculosis EchA6 (PDB entry 3HE2) as a search model, we determined initial phases by molecular replacement (PHASER39). The models were rebuilt and refined (COOT40, REFMAC541, PHENIX.REFINE42) using non-crystallographic symmetry ... |
| 2 | 3p96 | 3km3, 3k9g | http://www.nature.com/articles/nmeth.3212 | Macromolecular X-ray structure determination using weak, single-wavelength anomalous data | 2014 | G Bunkóczi, AJ McCoy, N Echols… - Nature …, 2014 - nature.com | ... phasing, accounting for 73% of such structures deposited in the Protein Data Bank (PDB;http://www.pdb.org/) 1 in 2013. In the SAD method, the X-ray diffraction from anomalouslyscattering atoms in a molecule provides X-ray phase information for the entire crystal structure ... |
| 3 | 4jnq | - | http://www.mdpi.com/2218-0532/85/1/5 | Natural Products as New Treatment Options for Trichomoniasis: A Molecular Docking Investigation | 2017 | MS Setzer, KG Byler, IV Ogungbe, WN Setzer - Scientia Pharmaceutica, 2017 - mdpi.com | ... Page 8. Sci. Pharm. 2017, 85, 5 8 Figure 4. Overlay of the protein structures of Brucella melitensisTxR, PDB 4JNQ [24] (red ribbon), and the homology model of Trichomonas vaginalis TxR (blueribbon). The co-crystallized ligand is shown as a wireframe structure. ... |
| 4 | 3v2i | - | http://www.mdpi.com/2079-6382/5/2/16/htm | Small Molecule Docking Supports Broad and Narrow Spectrum Potential for the Inhibition of the Novel Antibiotic Target Bacterial Pth1 | 2016 | PP Ferguson, WB Holloway, WN Setzer, H McFeeters - Antibiotics, 2016 - mdpi.com | ... were obtained from the Protein Data Bank and each structure was analyzed for ... The Pth1 setincluded eight bacterial structures: Escherichia coli (PDB 2PTH) [11 ... aeruginosa (4FYJ) [14],Francisella tularensis (3NEA) [15], Burkholderia thailandensis (3V2I) [31], Acinetobacter ... |
| 5 | 3tmg | - | http://www.mdpi.com/2073-4352/3/2/306 | Glycine Betaine Recognition through Cation-PI Interactions in Crystal Structures of Glycine Betaine Complexes with C-Ethyl-pyrogallol [4] arene and C-Ethyl-resorcin [4]arene as Receptors | 2013 | I Fujisawa, K Aoki - Crystals, 2013 - mdpi.com | ... 18. Gardberg, A.; Fox, D.; Staker, B.; Stewart, L. Crystal Structure Of Glycine Betaine, L-Proline ABC Transporter, Glycine/Betaine/L-Proline-Binding Protein (ProX) from Borrelia Burgdorferi;PDB (Protein Data Bank): Upton, NY, USA, 2013; No. 3TMG. 19. ... |
| 6 | 3oc6 | - | http://www.mdpi.com/1422-0067/19/9/2518 | Biochemical Characterization and Structural Modeling of Fused Glucose-6-Phosphate Dehydrogenase-Phosphogluconolactonase from Giardia lamblia | 2018 | L Morales-Luna, H Serrano-Posada- International journal of, 2018 - mdpi.com | Recent Trends and Applications of Molecular Modeling in GPCRLigand Recognition and Structure -Based Drug Design. Choose your preferred view mode Giardia lamblia. G6PD. purification. recombinant expression. bioinformatics analysis. three-dimensional structure |
| 7 | 2lwk | - | http://www.mdpi.com/1422-0067/17/6/779/htm | Recent Advances in Developing Small Molecules Targeting Nucleic Acid | 2016 | M Wang, Y Yu, C Liang, A Lu, G Zhang - International journal of molecular , 2016 - mdpi.com | ... Figure 12A) consists of a planar ring, an amino sugar structure and a fused cyclohexane ringsystem. A lot of structural studies have been investigated to understand the interaction betweenDNA duplex and molecule [28,46,47,48,49,50,51]. Most of the structures indicate that ... |
| 8 | 3tcq | - | http://www.mdpi.com/1422-0067/17/11/1748/htm | Integrated Computational Approach for Virtual Hit Identification against Ebola Viral Proteins VP35 and VP40 | 2016 | MU Mirza, N Ikram - International Journal of Molecular Sciences, 2016 - mdpi.com | ... We have identified VP40 assemblies in a filamentous structure and have shown that disruption of these structures halts viral egress... The homology-based search inferred that the 3D coordinate crystal structure of the Reston Ebola virus RNA binding domain (PDB ID: 3KS4), in addition to the crystal structure of the Sudan Ebola virus matrix protein VP40 (PDB ID: 3TCQ), were the best hits based on query coverage ... |
| 9 | 4iv5 | - | http://www.mdpi.com/1422-0067/16/8/18836/pdf | From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases | 2015 | D Shi, NM Allewell, M Tuchman - International Journal of Molecular …, 2015 - mdpi.com | ... dodecameric holoenzyme with DHOase, were determined [50,51]. Only one eukaryotic ATCasestructure, of Trypanosoma cruzi, has been determined (PDB code: 4IV5). ... Both domains havean αβα structure with a parallel β-sheet in the center and α helices on both sides. ... |
| 10 | 3ek2 | - | http://www.mdpi.com/1422-0067/15/2/2672/pdf | Paclitaxel Induces Apoptosis in Breast Cancer Cells through Different Calcium-Regulating Mechanisms Depending on External Calcium Conditions | 2014 | Z Pan, A Avila, L Gollahon - International journal of molecular sciences, 2014 - mdpi.com | ... 3 2i6x ?10.3 Porphyromonas gingivalis hydrolase 4 3ek2 ?10.3 Burkholderia pseudomallei eonyl reductase ... Two libraries, ?pdb_subset.py? and ?pdb_centermass.py? from the pdb-tools project (https://code.google.com/p/pdb-tools/) were modified and used in Artemis. ... |