We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SQO | 2023 | 0 |
| 8SQP | 2023 | 0 |
| 6ANZ | 2017 | 0 |
| 6AP5 | 2017 | 0 |
| 6AQ3 | 2017 | 0 |
| 8SQQ | 2023 | 0 |
| 6AQH | 2017 | 0 |
| 6AQY | 2017 | 0 |
| 8SQR | 2023 | 0 |
| 8SQT | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4qgr | 3njd | http://onlinelibrary.wiley.com/doi/10.1002/prot.25007/full | Prediction of homoprotein and heteroprotein complexes by protein docking and templatebased modeling: A CASPCAPRI experiment | 2016 | MF Lensink, S Velankar - Proteins: Structure, , 2016 - Wiley Online Library | ... Next article in Early View: Critical assessment of methods of protein structure prediction: Progressand new directions in round XI. ... E-mail: marc.lensink@univ-lille1.fr or Shoshana J. Wodak; VIBStructural Biology Research Center, VUB, 1050 Brussels, Belgium. ... |
| 2 | 3mx6 | - | http://search.proquest.com/openview/61c4474dc9c0d8c2eab66e35f99716fb/1?pq-origsi... | Methionine aminopeptidase as a target for the discovery of novel antibacterial agents | 2016 | C Chen - 2016 - search.proquest.com | ... 14. Figure 2-1. Crystal structure of RpMetAP I (PDB ID: 3MX6, Edwards T. et. al., 2010). Metalions shown in the active site as spheres are two Mn (II) ions. 15. Materials and Methods.Screening of suitable induction conditions for expression of RpMetAp I. ... |
| 3 | 4fi5 | - | http://onlinelibrary.wiley.com/doi/10.1002/jcb.25765/full | Prediction of B Cell Epitopes Among Hantavirus Strains Causing Hemorragic Fever With Renal Syndrome | 2016 | S Kalaiselvan, S Sankar, M Ramamurthy - Journal of Cellular , 2016 - Wiley Online Library | ... The 3-D predicted tertiary structure of protein for the Hantaan genotype. ... Our consensus Hantaanvirus nucleoprotein-coding aa submission had 93% (Z-score: 2.19) sequence identity withN-terminal domain of Hantaan virus strain 76118 nucleoprotein (PDB ID: 4FI5) and 79 ... |
| 4 | 3tzs | - | https://patents.google.com/patent/US20160282341A1/en | Plasmonic biosensors with built-in artificial antibodies | 2016 | S Singamaneni, L Tian, KK Liu, A Abbas- US Patent App. 15, 2016 - Google Patents | organic silane monomers are functionalized prior to polymerizing the functional monomers onto the template molecule-nanostructure core structure 6.8, MW=64.5 kDa) or 0.5 mg/mL recombinant human neutrophil gelatinase-associated lipocalin (NGAL; pdb ID: 3TZS , Ip=8.9 |
| 5 | 3vab | - | http://www.jbc.org/content/291/18/9785.short | Dimerization of Bacterial Diaminopimelate Decarboxylase Is Essential for Catalysis | 2016 | MG Peverelli, TPS da Costa, N Kirby - Journal of Biological , 2016 - ASBMB | ... and 1TUF) (9), Aquifex aeolicus (PDB code 2P3E), and Brucella melitensis (PDB code 3VAB)show that ... both a dimer (PDB codes 1HKW and 1HKV) (7) and a tetramer (PDB code 2O0T ... arethe results of earlier studies aimed at characterizing the quaternary structure of DAPDC ... |
| 6 | 3tl6 | - | https://link.springer.com/chapter/10.1007/978-3-319-23497-7_13 | Basic Exploratory Proteins Analysis with Statistical Methods Applied on Structural Features | 2015 | E Del Prete, S Dotolo, A Marabotti- Mathematical Models in, 2015 - Springer | 1JP7, 1M73, 1ODK, 1PK9, 1QE5, 1TCU, 1V4N, 1VMK, 1XE3, 1Z33, 2P4S, 3KHS, 3OZE, 3SCZ, 3TL6 , 3UAV, 4D98 2. Different online and local tools have been used to extract protein structural properties from PDB files: Vadar [15], for secondary structure (also confirmed |
| 7 | 3gp5 | 4dz6, 3gw8 | http://www.sciencedirect.com/science/article/pii/S0010854515001125 | Vanadium and proteins: Uptake, transport, structure, activity and function | 2015 | JC Pessoa, E Garribba, MFA Santos… - Coordination Chemistry …, 2015 - Elsevier | ...A more recent 2.2 Å structure of a transition state nucleoside diphosphate kinase from Borrelia burgdorferi bound to vanadate(V) and ADP was deposited (PDB: 4DZ6) ... Later the structure of the bacterial dPGM from Burkholderia pseudomallia was also solved complexed with vanadate(V) (PDB: 3GW8 and 3GP5) [319]; in the 3GW8 structure at 1.9 Å resolution, glycerol, from the crystallization conditions, reacted with vanadate(V) forming a species quite similar to the enzymatic substrate. ... |
| 8 | 3f0d | 4l83, 4lsm, 4lhr, 3swo, 4nbr, 4kzp, 4mpq, 4kyx, 3urr, 3v7n, 4lsb, 4ni5, 3pme, 4maq, 3quv, 4lfy, 3qxz, 4efi, 3uw3, 4nim, 3m1x, 4mg4, 4lc3, 4jqp, 3laa, 4kzk, 4ijn, 4lvu, 3te8, 3md7, 3mqd | http://chur.chu.edu.tw/handle/987654321/42826 | A Study of Residue Contact Number Among the Amino Acid and Structural Alphabet | 2015 | - 2015 - chur.chu.edu.tw | ... present in the protein inside or outside with the local secondary structure and demonstratePage 4. iii ... Keyword: Structural Alphabet, Amino Acid Interaction, Amino Acid contact, scoringmatrix Page 5. ... 3-1PDB DSSP .... ... |
| 9 | 3h81 | 3swx, 3oc7, 3myb, 4g7f, 4je1, 3moy, 3p5m, 4di1, 3pe8, 3trr, 3tlf, 3rsi, 3rrv, 3njb, 3ome, 3p85, 3n5o, 3q1t, 4hdt, 3t3w, 3he2, 4f82, 3lg6, 3qxi, 3qka, 3r0o, 3qxz, 3qmj, 3r6h, 3r9q, 3qre, 3r9s, 3r9t, 3qyr, 3qk8 | http://search.proquest.com/openview/0cb26ac6fdfa1ff7a54fca188db46fb4/1?pq-origsi... | Development and optimization of a clustering process that utilizes active site features to identify functionally relevant groups within protein superfamilies | 2015 | JB Leuthaeuser - 2015 - search.proquest.com | ... Key residues are identified from structural overlays ... Two protein structures of interest (3H8A blueand 2AKM purple) are aligned to a protein structure (1OEP gray ... In addition to forming ASPs, DASPcan also search the PDB and GenBank (NCBI protein) databases for proteins with ... |
| 10 | 4egf | - | http://pubs.acs.org/doi/abs/10.1021/jacs.5b08968 | A General Strategy for the Discovery of Metabolic Pathways: d-Threitol, l-Threitol, and Erythritol Utilization in Mycobacterium smegmatis | 2015 | H Huang, MS Carter, MW Vetting - Journal of the , 2015 - ACS Publications | ... 5) and (2) an experimentally verified l-xylulose reductase from M. smegmatis (MSMEG_3262;UniProt ID A0QXD6; PDB 4EGF) that shares 44 ... reaction that interconverts d-glyceraldhyde-3Pand dihydroxyacetone phosphate in glycolysis, ie, the active site structure can be ... |