We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KVY | 2020 | 3 |
| 7KXA | 2020 | 2 |
| 7L2A | 2020 | 0 |
| 7L32 | 2020 | 0 |
| 7L3O | 2020 | 1 |
| 7L3P | 2020 | 0 |
| 7L3Q | 2020 | 2 |
| 7L4A | 2020 | 0 |
| 7L4G | 2020 | 4 |
| 7L6C | 2021 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4qfh | - | http://repositorio.unicamp.br/handle/REPOSIP/332683 | Identificao e caracterizao de inibidores da enzima glicose-6-fosfato isomerase de Leishmania mexicana | 2018 | SGR Mota - 2018 - repositorio.unicamp.br | A computational analysis of cavities present on LmPGI crystallographic structure suggests a potential binding site for the inhibitors PBS Phosphate Buffer Solution PDB Protein Data Bank SSGCID Seattle Structural Genomics Center for Infectious Diseases |
| 2 | 4qfh | - | https://www.arca.fiocruz.br/handle/icict/23073 | Integrao de diferentes abordagens para a avaliao de atividade antiparasitria, propriedades ADMET e alvos celulares de novas Arilimidamidas sobre | 2016 | CC Santos - 2016 - arca.fiocruz.br | OMS Organizao Mundial de Sade PAINS Do ingls Pan-assay Interference compounds PCR Reao em cadeia da polimerase PDB Do ingls Protein Data Bank pKa Constante de ionizao de cidos Pt Pentamidina SdpS Do ingls Spermidine synthase |
| 3 | 4qfh | 4g7f, 4gie | https://www.mdpi.com/2218-273X/9/9/484 | Insights into Ergosterol Peroxide's Trypanocidal Activity | 2019 | T Meza-Menchaca, A Ramos-Ligonio- Biomolecules, 2019 - mdpi.com | \To identify potential Tc proteins that might directly interact with ergosterol peroxide, an inverse-docking screening was performed on a subset of Tc protein crystallography structures.. Table 1. The best matches between T. cruzi proteins and ergosterol peroxide in descending order of ∆G predictive value ... Dihydroorotate dehydrogenase 4QFH 3W1R −9.1 −11.17 6.407 |
| 4 | 4qfh | - | http://www.sciencepubco.com/index.php/ijbas/article/view/4123 | Ligand docking and binding site analysis with pymol and autodock/vina | 2015 | MA Rauf, S Zubair, A Azhar - International Journal of Basic and …, 2015 - sciencepubco.com | ... In recent years, the process of virtual screening technique for docking small molecules into aknown protein structure is a powerful tool for drug ... Enter the name of Protein or enzyme that willbe used for docking studies (For example, Glucose 6 Phosphate or its pdb id 4QFH). ... |
| 5 | 4qgr | 4lc3 | http://onlinelibrary.wiley.com/doi/10.1002/prot.25192/full | Templatebased modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30 | 2016 | H Lee, M Baek, GR Lee, S Park - Proteins: Structure, , 2016 - Wiley Online Library | ... The structural similarity of oligomer templates to the experimental structure of the target (releasedafter the ... T90, 0.927/2OGA, 0.927/2OGA(0.903/4LC3), 0.921/4QGR(0.915/3B8X). ... with the givendimeric state was not available in the PDB, but a dodecamer structure (PDB ID: 3RCO ... |
| 6 | 4qgr | 3njd | http://onlinelibrary.wiley.com/doi/10.1002/prot.25007/full | Prediction of homoprotein and heteroprotein complexes by protein docking and templatebased modeling: A CASPCAPRI experiment | 2016 | MF Lensink, S Velankar - Proteins: Structure, , 2016 - Wiley Online Library | ... Next article in Early View: Critical assessment of methods of protein structure prediction: Progressand new directions in round XI. ... E-mail: marc.lensink@univ-lille1.fr or Shoshana J. Wodak; VIBStructural Biology Research Center, VUB, 1050 Brussels, Belgium. ... |
| 7 | 4qhq | - | https://scripts.iucr.org/cgi-bin/paper?tb5146 | Structural insights into the substrate specificity of SP_0149, the substrate-binding protein of a methionine ABC transporter from Streptococcus pneumoniae | 2019 | B Jha, R Vyas, J Bhushan, D Sehgal- Section F: Structural, 2019 - scripts.iucr.org | Z-score Rmsd (A ) Nalign %seq} Bound substrate PDB code Protein name and description 15.2 1.36 223 41 Met 4qhq A nutrient-binding protein (bound to methionine in the Sequence identity in SSM is calculated from structure (three-dimensional), rather than sequence |
| 8 | 4qhq | - | https://tel.archives-ouvertes.fr/tel-02296605/ | Dveloppement d'un alphabet structural intgrant la flexibilit des structures protiques | 2018 | I Sekhi - 2018 - tel.archives-ouvertes.fr | 84 4.2.2 Architecture du site web 2.5 Comparaison de temps d'excution de SAFlex- PDB avant et aprs optimisation ensemble de conformations gomtriques reprsentatif des fragments protiques, appels lettres structurales (LS) , et destines simplifier la structure 3D d |
| 9 | 4qhq | - | https://thesis.library.caltech.edu/10840/ | Structural and Functional Characterization of the Escherichia coli MetNI Methionine Transporter | 2018 | PT Nguyen - 2018 - thesis.library.caltech.edu | PTN participated in soaking experiments for the L-semethionine-bound MetNI structure ( PDB :3TUZ) and manuscript preparation. Page 12. xii transporter architecture and mechanism. Science 16. Oldham ML, Khare D, Quiocho FA, Davidson AL, Chen J. Crystal structure of a |
| 10 | 4qhq | - | http://www.degruyter.com/dg/justaccepted.articlelist.resultlinks.fullcontentlink... | The contribution of methionine to the stability of the Escherichia coli MetNIQ ABC transporter-substrate binding protein complex. | 2015 | PT Nguyen, QW Li, NS Kadaba, JY Lai, JG Yang… - Biological …, 2015 - degruyter.com | ... structures with PDB entries 3TQW, 3UP9, 4EF1, 4GOT, 4IB2, 4K3F, 4QHQ, 4QYM, and 4Q5T. ...2008) that was in turn solved by molecular replacement from PDB entry 1P99 (Williams et al.,2004), a Gly-Met-binding protein. ... Coordinates and structure factors have been ... |