We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5U4N | 2016 | 0 |
| 5UAI | 2017 | 0 |
| 4FK8 | 2012 | 0 |
| 5UCR | 2017 | 0 |
| 5UFT | 2017 | 0 |
| 5UJF | 2017 | 0 |
| 5UJU | 2017 | 0 |
| 5UM0 | 2017 | 0 |
| 5UNL | 2017 | 0 |
| 5UXV | 2018 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3r20 | - | http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0898-8 | Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis | 2016 | R Cloete, E Oppon, E Murungi - BMC , 2016 - bmcbioinformatics.biomedcentral. | ... Abbreviations used: NUI- Not under investigation, PDB- Protein Data Bank, TBSGC- TB StructuralGenome ... without 3R20 used as a template while the red model consist of 3R20 used as ... EM assistedwith modelling of the protein structure and WS visually inspected the quality of ... |
| 2 | 3oxk | - | http://scripts.iucr.org/cgi-bin/paper?hv9323 | Response to Errors in Crystal structure of HINT from Helicobacter pylori | 2016 | KF Tarique, S Devi, SA Abdul Rehman - Section F: Structural , 2016 - scripts.iucr.org | ... The confusion arises again from the various PDB entries where the same protein was namedas ... branch of the HIT family (http:// www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv ... has also beenidentified to contain purine nucleoside- and nucleotide- binding proteins' (3oxk; Lorimer et al ... |
| 3 | 5vm8 | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007904 | Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites | 2020 | AP Perlinska, A Stasiulewicz- PLOS Computational, 2020 - journals.plos.org | depicted with rainbow coloring (TrmD, PDB ID: 4yvg), (B) unknotted methyltransferase (Trm5, PDB ID: 2zzm On the top of this it was shown that the structure of the knotted core Different conformations of the ligand imply differences in both structural and chemical characteristics of |
| 4 | 4f3y | 4eqy, 5bq2, 5uy7 | https://www.sciencedirect.com/science/article/pii/S0882401018312464 | Reverse vaccinology and subtractive genomics-based putative vaccine targets identification for Burkholderia pseudomallei Bp1651 | 2018 | Z Nazir, SG Afridi, M Shah, S Shams, A Khan- Microbial pathogenesis, 2018 - Elsevier | 2.9. Protein 3D structures prediction. The target proteins structural information is vital for predicting immunogenic domains. The structure information of the target proteins was assessed by BLASTp analysis against Protein Data Bank ( PDB ) [42,43]. 2.10. Antigenicity prediction |
| 5 | 6nb6 | - | https://www.annualreviews.org/doi/abs/10.1146/annurev-biophys-062920-063711 | Review of COVID-19 antibody therapies | 2021 | J Chen, K Gao, R Wang, DD Nguyen- Annual review of, 2021 - annualreviews.org | S230 SARS-CoV RBD IgG = 0.06 / BLI (73) 6NB6 (73) 4.30 Three-Dimensional Structure Alignment All of the available 3D structures of the SARS-CoV-2 S-protein RBD in complex with antibod- ies are aligned to ACE2 The PDB ID of these complexes can be found in Table 1 |
| 6 | 4k9d | 4l83 | https://benthamopen.com/FULLTEXT/TOBCJ-5-72 | Review on Computational Approaches for Identification of New Targets and Compounds for Fighting Against Filariasis | 2017 | M Mishra, P Srivastava- The Open Bioactive Compounds, 2017 - benthamopen.com | S100a12MMDB ID: 73787 PDB ID: 2WCF [Metal Binding Protein], Glyceraldehyde 3-phosphate dehydrogenase MMDB ID: 109769 PDB ID: 4K9D etc.) in In molecular biology and structural genomics, protein structure determination has become an important area of research |
| 7 | 3fdz | 3gp5 | https://core.ac.uk/download/pdf/649473507.pdf | Revisiting the Plasmodium falciparum druggable genome using predicted structures | 2025 | K Godinez-Macias, D Chen, J Wallis- npj Drug Discovery, 2 (1), 2025 - core.ac.uk | To assess druggability evidence, we leveraged the AlphaFill database of predicted ligandtransplants based on homology of AlphaFold structures to all structures in the PDB REDO |
| 8 | 3gvi | - | http://www.wjpps.com/admin/assets/article_issue/1382162610.pdf | Rhizobitoxine enhances nodulation by inhibiting ethylene synthesis of bradyrhizobium elkanii from lespedeza species: validation by homology modelling and | 2013 | R Vijayan, P Palaniappan, SA Tongmin - World J of pharm and , 2013 - wjpps.com | ... docking studies with the known inhibitor rhizobitoxine. The crystal structure of protein was taken from the Protein Data Bank (entry PDB code: 3GVI). So, we considered the active site residues predicted from the LIGSITE and CASTp has been used for binding with ... |
| 9 | 5vnx | 5jay | https://www.nature.com/articles/s41598-018-32905-1 | Riemerella anatipestifer AS87_RS09170 gene is responsible for biotin synthesis, bacterial morphology and virulence | 2018 | X Ren, X Wang, H Shi, X Zhang, Z Chen, KK Malhi- Scientific reports, 2018 - nature.com | 1DJE [30.2% identity]), Burkholderia multivorans ( PDB accession no. 5VNX [28.6% identity]) and Mycobacterium smegmatis ( PDB accession no. 3WY7 [29.9% identity]) 6). WT Yb2 cells were integral with clear structures , and few were undergoing division |
| 10 | 3jst | - | https://www.sciencedirect.com/science/article/pii/S0141813020335261 | Role of tetrachloro-1, 4-benzoquinone reductase in phenylalanine hydroxylation system and pentachlorophenol degradation in Bacillus cereus AOA-CPS1 | 2020 | OA Aregbesola, A Kumar, MP Mokoena- International Journal of, 2020 - Elsevier | Three-dimensional structure and homology modelling of the protein were predicted by submitting the amino acid sequence at the SWISS-MODEL tool at The modelled PDB files were submitted to an online tool (PDBsum) for determining the structural summary [34]. 2.12 ... and sequence identity of 59%, followed by PCD/DCoH (PDB: 3JST) from Brucella melitensis, |