We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6CKG | 2018 | 0 |
| 6CKP | 2018 | 0 |
| 6CU3 | 2018 | 0 |
| 6CUQ | 2018 | 0 |
| 6CXM | 2018 | 0 |
| 6CY5 | 2018 | 0 |
| 6D46 | 2018 | 0 |
| 6D47 | 2018 | 0 |
| 3TRR | 2011 | 0 |
| 6DEG | 2018 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3d5t | - | http://www.sciencedirect.com/science/article/pii/S0022519315003501 | Protein cold adaptation: Role of physico-chemical parameters in adaptation of proteins to low temperatures | 2015 | S Shokrollahzade, F Sharifi, A Vaseghi… - Journal of theoretical …, 2015 - Elsevier | ... Mesophilic, Burkholderia pseudomallei, 3D5T/A, 2.51. ... Fig. 1. The structure ofadenylate kinases from the psychrophile Bacillus globisporus (PDB ID: 1S3G). ... Thestructure is shown as surface representation by Pymol software. ... |
| 2 | 4dut | - | http://dndx.cnjournals.com/html/2015/3/20140319.htm | Structural and Functional Characterization of Acinetobacter baumannii Nucleoside Diphosphate Kinase | 2015 | Progress in Biochemistry and Biophysics, 2015, 42(3): 260-267 | ... 82.12. 2.4 Structure determination and refinement. Initially,wild type structurewas determined by molecular replacement (MR) method using Burkholderiathailandensis NDK (PDB code 4DUT) as starting model. After ... |
| 3 | 3ezl | - | http://dx.plos.org/10.1371/journal.pone.0119771 | Structure, Dynamics, and Interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 Examined by Molecular Modeling, Simulation, and Electrostatic … | 2015 | I Bhutani, S Loharch, P Gupta, R Madathil, R Parkesh - PloS one, 2015 - dx.plos.org | ... and Lys-418 based on the active site residues of the templates (PDB ID: 4F4Q ... Another interestingobservation was high structural similarity of generated three-dimensional structure of DprE2 withSDR family members such as acetoacetyl-coA reductase (PDBID: 3EZL, rmsd: 3.43 ... |
| 4 | 3uam | - | http://repository.dl.itc.u-tokyo.ac.jp/dspace/handle/2261/60455 | Studies on structures of novel sugar metabolic enzymes | 2015 | - 2015 - repository.dl.itc.u-tokyo.ac.jp | ... Page 10. 4 Table 1-1 Classification of structure-known LPMOs. Organisms Protein Name FamilyPDB Fungi Hypcrea jecorina GH61B AA9 2VTC Thielavia terrestris GH61E AA9 3EII, 3EJA ...Burkholderia pseudomallei CBM33 AA10 3UAM 1-1-2 Enzymes in Leloir pathway ... |
| 5 | 3njd | 3svk | http://search.proquest.com/openview/ee126ccbca4d4d8958dd7f9217f8fdd2/1?pq-origsi... | Protein 3-D Structure Representation for Alignment-Free Comparison and Structural Motif Discovery of Proteins, and Hierarchical Protein Classification | 2015 | S Singh - 2015 - search.proquest.com | ... a lot more diversity and complexity, rather than having a simple, unique rigid structure, and that ...of a growing number of methods, there is no widely accepted 3-D structural alignment method.None of the current methods for searching PDB are guaranteed to find true matches in ... |
| 6 | 3laa | - | http://scripts.iucr.org/cgi-bin/paper?mh5193 | Selecting soluble/foldable protein domains through single-gene or genomic ORF filtering: structure of the head domain of Burkholderia pseudomallei antigen | 2015 | LJ Gourlay, C Peano, C Deantonio - Section D: Biological , 2015 - scripts.iucr.org | ... 1 [link] , Supplementary Tables S1 and S2). The 1.8 resolution crystal structure of BPSL2063Xtal was solved by molecular replacement using the structure of BpaA (PDB entry 3laa ; Edwardset al., 2010 [Edwards, TE, Phan, I., Abendroth, J., Dieterich, SH, Masoudi, A ... |
| 7 | 3f0d | 4l83, 4lsm, 4lhr, 3swo, 4nbr, 4kzp, 4mpq, 4kyx, 3urr, 3v7n, 4lsb, 4ni5, 3pme, 4maq, 3quv, 4lfy, 3qxz, 4efi, 3uw3, 4nim, 3m1x, 4mg4, 4lc3, 4jqp, 3laa, 4kzk, 4ijn, 4lvu, 3te8, 3md7, 3mqd | http://chur.chu.edu.tw/handle/987654321/42826 | A Study of Residue Contact Number Among the Amino Acid and Structural Alphabet | 2015 | - 2015 - chur.chu.edu.tw | ... present in the protein inside or outside with the local secondary structure and demonstratePage 4. iii ... Keyword: Structural Alphabet, Amino Acid Interaction, Amino Acid contact, scoringmatrix Page 5. ... 3-1PDB DSSP .... ... |
| 8 | 4efz | - | http://www.jbc.org/content/early/2015/06/16/jbc.M115.652537.short | Characterizations of Two Bacterial Persulfide Dioxygenases of the Metallo-β-lactamase Superfamily | 2015 | SA Sattler, X Wang, KM Lewis, PJ DeHan… - Journal of Biological …, 2015 - ASBMB | ... The statistics for the diffraction data are listed in Table 1. Initial phasing of apo- form PpPDO2diffraction data was conducted by molecular replacement with the PDB coordinates of model4EFZ using PHENIX Phaser (18). ... RESULTS Global Structure ... |
| 9 | 4qic | - | http://www.annualreviews.org/doi/abs/10.1146/annurev-genet-112414-054813 | General Stress Signaling in the Alphaproteobacteria | 2015 | A Fiebig, J Herrou, J Willett - Annual review of genetics, 2015 - annualreviews.org | ... (f) Structural representation of full-length PhyR in an open conformation bound to NepR(PDB:4QIC). This complex structure evinces an unusual exchange of receiver domain secondaryelements 5-12 (yellow) between adjacent PhyR/NepR complexes in the crystal lattice. ... |
| 10 | 4f4e | - | http://journals.iucr.org/d/issues/2015/03/00/dz5356/dz5356bdy.html | Crystal structure and enzymatic properties of a broad substrate-specificity psychrophilic aminotransferase from the Antarctic soil bacterium Psychrobacter sp. B6 | 2015 | A Bujacz, M Rutkiewicz-Krotewicz… - Biological …, 2015 - journals.iucr.org | ... PDB references: PsyArAT, 4rkc complex with aspartate, 4rkd [Cited in] [Download citation ... Crystalstructure and enzymatic properties of a broad substrate-specificity psychrophilic ... Here, geneisolation, protein expression, purification, enzymatic properties and structural studies are ... |