We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6C0D | 2018 | 0 |
| 6C0E | 2018 | 0 |
| 8T7W | 2023 | 0 |
| 8T7Z | 2023 | 0 |
| 6C7C | 2018 | 0 |
| 5SCU | 2022 | 0 |
| 6CJB | 2018 | 0 |
| 6CKG | 2018 | 0 |
| 6CKP | 2018 | 0 |
| 6CU3 | 2018 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3kzx | 3p96 | https://open.bu.edu/handle/2144/15107 | Sequence-and structure-based approaches to deciphering enzyme evolution in the Haloalkonoate Dehalogenase superfamily | 2014 | C Pandya - 2014 - open.bu.edu | ... , all , + and /20. Importantly, ~10% of domain combinations in the Protein Data Bank(PDB) are domain insertions. ... It performs structure-based alignment and secondary-structure comparison to identify conserved and inserted secondary structural elements. ... |
| 2 | 3u0i | - | http://www.sciencedirect.com/science/article/pii/S0022283615005446 | SequenceStructureFunction Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria | 2015 | FH Ahmed, PD Carr, BM Lee, L Afriat-Jurnou - Journal of molecular , 2015 - Elsevier | ... SequenceStructureFunction Classification of a Catalytically Diverse OxidoreductaseSuperfamily in ... Functional annotation using phylogenetic, structural, and spectroscopic methodsrevealed their ... Four novel crystal structures show that plasticity in substrate binding pockets ... |
| 3 | 3oj6 | - | https://www.nature.com/articles/s41467-022-33714-x | Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine | 2022 | S Kimura, V Srisuknimit, KL McCarty, PC Dedon- Nature, 2022 - nature.com | as blasticidine-S deaminase ( PDB 3oj6 ) and cytidine deaminase ( PDB 4eg2). The structure of Blasticidine-S deaminase (BSD) is highly similar to the predicted structure of TrcP-NTD |
| 4 | 4qtp | - | https://www.biorxiv.org/content/10.1101/674879v1.abstract | SiaABCDA threonine phosphorylation pathway that controls biofilm formation in Pseudomonas aeruginosa | 2019 | WH Poh, J Lin, B Colley, N Mller, BC Goh- BioRxiv, 2019 - biorxiv.org | 7NTU Institute of Structural Biology, Nanyang Technological University, Singapore 18 Biofilms are ubiquitous, multicellular structures embedded in a self-made matrix, that can suspended biofilms greatly influence the development, structure and function of their surface-attached |
| 5 | 5elo | 6c86, 5vl1, 6aqg | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25699 | Side chain rotameric changes and backbone dynamics enable specific cladosporin binding in Plasmodium falciparum lysyltRNA synthetase | 2019 | J ChhibberGoel, A Sharma- Proteins: Structure, Function, and, 2019 - Wiley Online Library | ( PDB : apo 6C86, holo 5ELO ) and M. ulcerans (MuKRS) ( PDB : apo 5VL1, holo re-arrangements and are noted as 1 to 4 for all the four PDB data sets (Table 1 and Fig. 1). In based on structural analyses. Our analyses also provide a platform for structure -guided |
| 6 | 3tzs | 3tf6 | http://www.pnas.org/content/early/2015/07/30/1508902112.short | Siderocalin-mediated recognition, sensitization, and cellular uptake of actinides | 2015 | BE Allred, PB Rupert, SS Gauny… - Proceedings of the …, 2015 - National Acad Sciences | ... molecules from available crystal structures (the structures described in this work plus PDB (41)accession ... 1 × 8U, 3FW4, 3FW5, 3HWE, 3HWF, 3HWG, 3K3L, 3PEC, 3PED, 3TF6, 3TZS, 3UOD,and ... of key calyx residues, colored as in H, isolated from the 73-structure superposition ... |
| 7 | 4z9n | - | http://rnajournal.cshlp.org/content/24/11/1530.short | Signal transduction-dependent small regulatory RNA is involved in glutamate metabolism of the human pathogen Bordetella pertussis | 2018 | K Keidel, F Amman, I Bibova, J Drzmisek, V Benes- RNA, 2018 - rnajournal.cshlp.org | Besides its role in the stabilization of the RNA duplexes, Hfq can also actively remodel the structure of RNAs and increase or decrease the stability of BLAST search unveiled that the BP3831 protein exhibits high homology with the entry 4Z9N in the PDB protein database |
| 8 | 3p10 | 3pk0, 3p32, 3p4i | http://scripts.iucr.org/cgi-bin/paper_yard?rr5017 | Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement with PrimeX | 2012 | JA Bell, KL Ho, R Farid - Acta Crystallographica Section D: Biological Crystallography, 2012 - scripts.iucr.org | ... This requirement ensured that the test set deposited in the PDB was likely to be the one that was actually used in the refinement of the deposited coordinates. ... Table 1 Characteristics of ultrahigh-resolution protein structures. `Corrected', PDB code, Resolution (?), No. ... |
| 9 | 3i4e | - | http://dx.plos.org/10.1371/journal.pone.0086948.g007 | Silencing Motifs in the Clr2 Protein from Fission Yeast, Schizosaccharomyces pombe | 2014 | D Steinhauf, A Rodriguez, D Vlachakis, G Virgo… - PloS one, 2014 - dx.plos.org | ... forcefield. The crystal structure of the Haloalkane Dehalogenase (PDB entry: 3QNM) was used for the modeling of C2SM1. Likewise ... the C2SM2. Finally, the Isocitrate Lyase (PDB entry: 3I4E) was used for the modeling of C2SM3. The sequence ... |
| 10 | 3gwc | - | https://pdfs.semanticscholar.org/756c/21ba7ab35e0016d697910450710130b7af99.pdf | Similarity in the Amino Acid Sequences of Mycobacterium tuberculosis Protein Targets Involved in Binding Sites of Docking with Thiacetazone | 2016 | M Mafakheri, S Sardari- Pharm Anal Acta, 2016 - pdfs.semanticscholar.org | reviewed and well known M. tuberculosis protein target was chosen (Table 1) then they were downloaded in pdb format from 68 3GWC Transferase -6.24 RRRHHHHM 21. A Structural View of Biology, An Information Portal to 124286 Biological Macromolecular Structures . 22 |