SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3fdz 3ezn http://search.proquest.com/openview/4de212650c142a0818d74dc9ee7da4f8/1?pq-origsi... Computational methods & forcefields for protein design, structure prediction, & refinement with natural & modified amino acids 2015 GA Khoury - 2015 - search.proquest.com ... These were assessed by aligning the modied and unmodied structures containedinthe PDB with each other. (B) Structural similarity between the unmodied structure(U-PDB) and states of unmodied structure simulation (S1). ...
2 3ief 3knu http://www.sciencedirect.com/science/article/pii/S0022283614005798 Landscape of Intertwined Associations in Multi-Domain Homo-Oligomeric Proteins 2015 SS MacKinnon, SJ Wodak - Journal of molecular biology, 2015 - Elsevier ... In addition, we identified protein structures in the PDB related to each member of our ... We examineddomain re-orientations in these relatives and how the quaternary structure is affected ... This allowedus to characterize the level of structural plasticity in protein families comprising ...
3 4n0w - http://peds.oxfordjournals.org/content/early/2015/05/17/protein.gzv026.short Conserved water molecules in bacterial serine hydroxymethyltransferases 2015 T Milano, ML Di Salvo, S Angelaccio… - … Design and Selection, 2015 - Oxford Univ Press ... After PDB scrutiny, 11 structures were selected on the basis of better resolution, the absenceof point ... (2003) and Mustata and Briggs (2004) who analyzed the structural role of ... MD simulationswere carried out on the dimer in the apo form of the structure 4N0W corresponding to ...
4 2kwl 2lky, 2lol http://repositoriodigital.uns.edu.ar/handle/123456789/2489 Aspectos estructurales y dinmicos en la relajacin de sistemas complejos, con nfasis en agua lquida, sobreenfriada y nanoconfinada 2015 SR Accordino - 2015 - repositoriodigital.uns.edu.ar prctico: previene la agregacin de dos placas de grafeno. Page 9. 9 Abstract In this Thesis we studied, by means of molecular dynamic simulations, the structural and We also determined the geometrical quality of the local structure of these kinds of molecules. In
5 3o0m 4lsm https://link.springer.com/content/pdf/10.1038/srep13652.pdf Dimeric interactions and complex formation using direct coevolutionary couplings 2015 RN Dos Santos, F Morcos, B Jana, AD Andricopulo- Scientific reports, 2015 - Springer Structural Modeling. All the homodimers used in this study were retrieved from Protein Data Bank ( PDB )60. The PDB accession code for each structure is shown in Table 1. ... Histidine triad protein 3O0M 149 ... GAPDH 4LSM 346 Gp_dh_N
6 2lwk - http://www.sciencedirect.com/science/article/pii/S0006349515011601 Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion Solutions 2015 YZ Shi, L Jin, FH Wang, XL Zhu, ZJ Tan - Biophysical journal, 2015 - Elsevier TABLE 1 The 32 RNA Molecules for 3D Structure Prediction in This Work 26 2LWK ...
7 3ke1 4emd, 4ed4, 4dxl, 3q8h http://onlinelibrary.wiley.com/doi/10.1002/anie.201408487/full Molecular Recognition in Chemical and Biological Systems 2015 E Persch, O Dumele, F Diederich - … Chemie International Edition, 2015 - Wiley Online Library ... c) Cocrystal structure of ligand 12 bound to TGT (1.68 Å resolution, PDB ID: 3RR4)51 and d ...reorganization of the protein and the changes in the water network solvation occurring upon minorchanges in the ligand structures.52 Without high-resolution structural information, a ...
8 3oa1 - http://smbb.com.mx/congresos%20smbb/guadalajara15/PDF/XVI/trabajos/VIII/VIIIC-27... Modelado del Monómero de la Fosfoproteína del Virus de la Rabia 2015 EMD González, FGB González, JC Basurto… - smbb.com.mx ... PDB ID Description 1VY1 Dominio del C-Terminal de la polimerasa del virus de la rabia 3OA1Cristal de ... IPN – ESM Bibliografía. 1. Ivanov , I., Crépin, T., Jamin, M., & Ruigrok, RH (10 de Enerode 2010). Structure of the Dimeration Domain of the Rabies Virus Phosphoprotein. ...
9 3uw1 - https://dspace.cuni.cz/handle/20.500.11956/79446 Understanding the interaction of antibodies and transcription factors with their ligands through structural biology 2015 J kerlov - 2015 - dspace.cuni.cz One such enzyme, ribose-5-phosphate isomerase A from Burkholderia thailandensis (PDB code 3UW1 [157]) also binds its substrate ribose-5-phospate in a linear form in an orientation very similar to that of deoxyribose-5-phosphate in C-DeoR
10 4i1v - http://dx.plos.org/10.1371/journal.pone.0129600 Tethering of Epidermal Growth Factor (EGF) to Beta Tricalcium Phosphate (βTCP) via Fusion to a High Affinity, Multimeric βTCP-Binding Peptide: Effects on … 2015 LM Alvarez, JJ Rivera, L Stockdale, S Saini, RT Lee… - PloS one, 2015 - dx.plos.org ... The TT motif has been implicated in the interactions of dephospho-CoA kinases with the diphosphate group of adenosine di-phosphate (ADP) through hydrogen bonding mechanisms (PDB ID#s: 1JJV, 4I1V; [83]), suggesting a potential role for the TT motif in our binding peptide for interaction with calcium phosphate ...