SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 4lfy - https://tspace.library.utoronto.ca/handle/1807/70867 STRUCTURE DETERMINATION AND BIOCHEMICAL CHARACTERIZATION OF NOVEL HUMAN UBIQUITIN-LIKE DOMAINS. 2015 RS Doherty - 2015 - tspace.library.utoronto.ca ... Table 3.2: Secondary structure elements of NFATc2IP, ubiquilin-1, ubiquitin and SUMO1/2/3. ...Table 3.4: UIM:ubiquitin complexes deposited in the PDB, along with UIM sequence ... ubiquitin,along with the number of supporting publications and supporting structural complexes that ...
2 3pgz 3lgj http://www.freepatentsonline.com/y2015/0218629.html ENZYME CONSTRUCT 2015 A Heron, J Clarke, R Moysey… - US Patent …, 2015 - freepatentsonline.com ... In order to assess whether a suitable protein structure exists to use as a “template” to build aprotein model, a search is performed on the protein data bank (PDB) database. ... The sequencealignment and template structure are then used to produce a structural model of the ...
3 3rd5 - http://www.jbc.org/content/290/52/30728.short Pleiotropic Functions of Tumor Suppressor WWOX in Normal and Cancer Cells 2015 M Abu-Remaileh, E Joy-Dodson - Journal of Biological , 2015 - ASBMB ... B, a structural model of the SDR region (generated by the RosettaCM protocol as implemented by the Robetta server (78), starting from PDB ID 3rd5 (58) as a template structure) shows an extended central β sheet formed by Rossmann folds. ...
4 3fvb 4di0 https://tspace.library.utoronto.ca/handle/1807/69450 Understanding the Encapsulins 2015 D Radford - 2015 - tspace.library.utoronto.ca ....The Dps-like bacterioferritin-like family was defined as the set of proteins similar to the Brucella melitensis biovar Abortus 2308 bacterioferritin [PDB accession: 3FVB] .. Lastly the rubrerythrin-like family was defined as the set of proteins similar to the Burkholderia pseudomallei rubrerythrin [PDB accession: 4DI0], and N-terminal domains of the Ferroglobus placidus DSM 10642 encapsulin ...
5 3uf8 4ijn, 4lfy, 4l83, 4i1i, 4lsm, 4k73, 4ecp, 4gnv, 4kzk, 3uw1, 4e4t, 3v2i, 4jqp, 3uw3, 4f3n, 3vav, 4lhr https://scripts.iucr.org/cgi-bin/paper?xh5047 Identifying and quantifying radiation damage at the atomic level 2015 M Gerstel, CM Deane, EF Garman- Journal of synchrotron radiation, 2015 - scripts.iucr.org PDB structures contain occupancy values outside the valid probability range: the structure variance of different packing density metrics applied to the 2,704 selected PDB structures .
6 3d53 3oc6 http://pubs.rsc.org/en/content/articlehtml/2015/sc/c5sc01065a Enzyme repurposing of a hydrolase as an emergent peroxidase upon metal binding 2015 N Fujieda, J Schätti, E Stuttfeld, K Ohkubo, T Maier… - Chemical …, 2015 - pubs.rsc.org ... These wild-type proteins or their single mutant isoforms (pdb code: 3D53, 2F99, 1JSY, 1FHI(bearing a Q83E mutation), 1MEJ ... yellow sticks); (B) close-up view of the Cu1 binding site inCu·6-PGLac (PDB code 4TM7 ... The X-ray structure was refined to a resolution of 1.39 Å (Fig. ...
7 3m1x - http://www.sciencedirect.com/science/article/pii/S1046202315002078 Protein structure prediction guided by crosslinking restraints–A systematic evaluation of the impact of the crosslinking spacer length 2015 T Hofmann, AW Fischer, J Meiler, S Kalkhof - Methods, 2015 - Elsevier ... Based on the structure of calmodulin (PDB entry 2ksz) the average Cβ–Nz, Cβ–Cγ, Cβ–Cδ,Cβ–N H2 , and Cβ–S G distances ... Structure, Uniprot, Resolution [Å], Molecular weight [Da],Sequence length [aa], Lys portion [%], α-helix [%], β-sheet ... 3m1x, C4LXT9, 1.2, 15882, 138, 7, ...
8 3eom 3pfd, 3swo, 4n5f http://scripts.iucr.org/cgi-bin/paper?S1399004715006616 3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7T: crystal structure and function of a desulfinase with an acyl-CoA … 2015 M Schürmann, R Meijers, TR Schneider… - … Section D: Biological …, 2015 - scripts.iucr.org ... (2011). Acta Cryst. D67, 235-242.] ) with the crystal structure of an acyl-CoAdehydrogenase from Thermus thermophilus HB8 (PDB entry 1ukw ; RIKEN StructuralGenomics/Proteomics Initiative, unpublished work) as the search model. ...
9 3oc6 - https://scholarworks.iupui.edu/handle/1805/7949 Computational protein design: assessment and applications 2015 Z Li - 2015 - scholarworks.iupui.edu ... 53 xiii Page 14. Figure 3.8 Superposition of the target structures ( PDB ID 3PTE and 1B1U, cyan) ... These interactions are utilized in protein structure prediction and protein design. ... structural topology and function through evolution. Experimental techniques, such as ...
10 4pca - http://www.jbc.org/content/early/2015/05/15/jbc.M115.660829.short Structure and Biophysical Characterization of the S-adenosylmethionine Dependent O-methyltransferase PaMTH1, a Putative Enzyme Accumulating during … 2015 D Chatterjee, D Kudlinzki, V Linhard, K Saxena… - Journal of Biological …, 2015 - ASBMB ... α2 Page 7. Structure and Biophysical characterization of PaMTH1 7 loop ... Arg232, Asp235).CCoAOMT (Medicago sativa) is (PDB:1SUI) one of the closest structural homologueof PaMTH1 and also crystallizes as a dimer. The dimerization ...