We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3OCF | 2010 | 4 |
| 3OC7 | 2010 | 7 |
| 3OI9 | 2010 | 1 |
| 3OC9 | 2010 | 3 |
| 3O0H | 2010 | 9 |
| 3NWO | 2010 | 12 |
| 3NJD | 2010 | 4 |
| 3NF4 | 2010 | 6 |
| 3NDN | 2010 | 11 |
| 3MEQ | 2010 | 15 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rmi | 4q04, 4gt1, 4kzp | http://edepot.wur.nl/466662 | Prediction of Homodimeric Residue-residue Contacts Through Co-evolutionary and Sequence-based Analysis | 2018 | Y Hsieh - 2018 - edepot.wur.nl | 1000 residue range, and a quick pass of the identifiers through RCSB PDB's web-based However, we do not perform any sort of structural alignment to filter out structurally similar the case that this choice biases our dataset towards a certain type of structure , therefore impacting |
| 2 | 2khp | - | https://etd.ohiolink.edu/!etd.send_file?accession=akron1460988438&disposition=at... | Identifying selective ligands for glutaredoxin proteins with fragment based drug design approach and optimization of the bacterial selective hits | 2016 | RB Khattri - 2016 - etd.ohiolink.edu | ...These were compared to structures deposited in the Protein Data Bank (RCSB PDB). The PBD name for the BrmGRX is 2KHP (Leeper et. al, 2011) and hGRX1 is 1JHB (Sun et. al, 1998).. ... |
| 3 | 4odj | 4ig6, 4kgn, 4h3z | https://iris.sissa.it/handle/20.500.11767/59211 | Static and dynamic properties of knotted biopolymers: from bulk to nanochannels and nanopores | 2017 | A Suma - 2017 - iris.sissa.it | ... Several pioneering experiments and structural surveys demonstrated that knots can appear in biopolymers such as RNA [7], proteins [8 ... PDB download (~105 protein chains) ... We have used the same cutoff distance to check if some structure , such as the cyclotide, had a cyclized ... |
| 4 | 3lls | - | http://www.biochemj.org/bj/450/bj4500127.htm | Crystal structure of hexanoyl-CoA bound to beta-ketoacyl reductase FabG4 of Mycobacterium tuberculosis | 2013 | D Debajyoti, B Sudipta, R Amlan, B Rupam? - Biochemical Journal, 2013 - biochemj.org | ... The structure of the FabG4?NADH complex was determined by molecular replacement in MOLREP [21] using a monomer of the apoFabG4 structure (PDB code 3LLS). ... MtFabG1 (MabA;PDB code 1UZM) and FabG4 (PDB codes 3LLS and 3Q6I) were chosen as the receptor. ... |
| 5 | 3rr2 | - | http://www.sciencedirect.com/science/article/pii/S1570963913004147 | Structural and biochemical analyses of< i> Microcystis aeruginosa</i> O-acetylserine sulfhydrylases reveal a negative feedback regulation of cysteine biosynthesis | 2014 | M Lu, BY Xu, K Zhou, W Cheng, YL Jiang? - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2014 - Elsevier | ... The sequences are (PDB codes in parentheses) Mycobacterium tuberculosis OASS (2Q3D), Haemophilus influenzae OASS (1Y7L), Salmonella typhimurium OASS (1OAS), Mycobacterium marinum Atcc Baa-535 OASS (3RR2), Thermotoga maritima OASS (3FCA), Arabidopsis ... |
| 6 | 3quv | - | http://www.jbstonline.com/documents/vol2issue6/jbst2011020603.pdf | INSILICO CHARACTERIZATION OF TRANSFER RNA (M G37) METHYLTRANSFERASE IN BACTERIA, ARCHAEA AND EUKARYOTA | 2011 | T Srinivasan, D Sudarsanam - jbstonline.com | ... TrmD, aTrm5 and eTrm5 protein was modeled based on the 3QUV-B, 2ZZN-A, and PYX1Ain respectively. ... eTrm5 three dimensional structure is not available in PDB that has distinctlystructural topology to bacterial TrmD. 4. DISCUSSION ... |
| 7 | 3i4e | - | http://www.jbc.org/content/early/2018/07/20/jbc.RA118.004514.short | Gluconeogenic precursor availability regulates flux through the glyoxylate shunt in Pseudomonas aeruginosa | 2018 | A Crousilles, SK Dolan, P Brear, DY Chirgadze- Journal of Biological, 2018 - ASBMB | domain of each chain (Figure S7), suggesting that catalysis is accompanied by structural rearrangements Comparison of the P. aeruginosa IDH active site architecture with that of ICD in the The structure ( PDB ; 5M2E), solved to 2.7 resolution, was very similar to that reported for |
| 8 | 6q05 | - | https://www.journal.atmph-specialissues.org/uploads/179/8422_pdf.pdf | A Review of Current Literature on sudden Upsurge of COVID-19 | 2020 | R Sharma- Annals of Tropical Medicine and Public, 2020 - journal.atmph-specialissues.org | 6Q05 MERSCoV S structure in complex with SialylLewis Available from: http://www.rcsb.org/ pdb /results/results.do?tabtoshow=Unreleased and qrid=7E90BED0 coronavirus papain-like novel protease inhibitors: Design, synthesis, protein-ligand X-ray structure and biological |
| 9 | 2kz0 | - | http://search.proquest.com/openview/3f94657ea37d3e9d72f2c6f284f4d53a/1?pq-origsi... | Effects of Mutating the PPAR Subfamily Specific Residueson Basal Dimerization with RXR | 2012 | KV Moore - 2012 - search.proquest.com | entropy is the entropy distance for the subfamily, and the protein sequence position is the position of the amino acids found on model 2KZ0 of Protein Data Bank ( PDB ). Figure 1.1 Figure 2.2. Schematic Representation of the Domain Structure of PPARs. Page 25. 12 |
| 10 | 4fky | - | http://bbktheses.da.ulcc.ac.uk/81/ | The antigenic evolution of human influenza A haemagglutinin | 2013 | WD Lees - 2013 - bbktheses.da.ulcc.ac.uk | ... indicative results much more quickly than laboratory assays; - The use of large bodies ofsequence data in combination with structural information in ... 1.1 Influenza Structure InfluenzaA is an enveloped negative-sense RNA virus (Figure 1.1). It has two surface ... |