We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3MOY | 2010 | 6 |
| 3MMT | 2010 | 7 |
| 3MEQ | 2010 | 15 |
| 3MEN | 2010 | 13 |
| 3MEB | 2010 | 7 |
| 3MDX | 2010 | 5 |
| 3MC4 | 2010 | 7 |
| 3MBF | 2010 | 2 |
| 3M4S | 2010 | 5 |
| 3M1X | 2010 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3lgj | - | https://www.nature.com/articles/s41598-017-15774-y | Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34 | 2017 | E Cernooka, J Rumnieks, K Tars, A Kazaks- Scientific reports, 2017 - nature.com | Structural homologs of the ORF6 protein were identified using the Dali server ... the number of superimposed atoms were ... 59 (PDB ID: 3LGJ) and 58 (PDB ID: 3VDY) |
| 2 | 3lgj | 3pgz | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6558165 | Comparative modelling and in-silico drug designing | 2013 | D Kumar, A Sarvate, S Singh? - IEEE Conference on Information & Communication Technologies (ICT), 2013 - ieeexplore.ieee.org | ... Model No. Template PDB ID Percentage of residues in most favoured region of Ramachandran plot Z- score 1 1Z9F 91 -4.9 2 3TQY 93 -4.53 3 1SRU 90 -3.23 ... 8 3PGZ 88 -4.27 9 3ULL 92 -4.06 10 2DUD 95 -4.13 11 1SE8 94 -4.33 12 3LGJ 94 -5.34 13 5MDH 90 -1.48 ... |
| 3 | 3lg6 | - | http://www.sciencedirect.com/science/article/pii/S0006291X11009399 | Identification and clarification of the role of key active site residues in bacterial glutathione< i> S</i>-transferase zeta/maleylpyruvate isomerase | 2011 | T Fang, DF Li, NY Zhou - Biochemical and Biophysical Research Communications, 2011 - Elsevier | ... 2. Phylogenetic relationships of NagL (PDB ID, 2JL4) and other representative cGSTs from the protein data bank. ... delta (1V2A, 1R5A, 3F6F, 3EIN, 1PN9, 1JLV, 3F63 and lJLW), omega (1EEM), tau (2VO4, 1OYJ and 1GWC) and zeta (1FW1, 1E6B, 2JL4, 3NIV, 3LG6 and 2CZ2). ... |
| 4 | 3lg6 | - | http://www.sciencedirect.com/science/article/pii/S0304416514003171 | Molecular dynamics for computational proteomics of methylated histone H3 | 2014 | C Grauffel, RH Stote, A Dejaegere - Biochimica et Biophysica Acta (BBA)- …, 2014 - Elsevier | ... This analysis is made possible by the substantial amount of structural information available oncomplexes between PHD domains and modified histone tails. ... Protein Data Bank IDs are indicated,and NMR structures are labeled with a (*). Protein name, Ref. ... PDB structure. ... |
| 5 | 3ld9 | 3v9p | http://scripts.iucr.org/cgi-bin/paper?S1744309112050208 | Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of thymidylate kinase (TTHA1607) from Thermus thermophilus HB8 | 2013 | SK Chaudhary, J Jeyakanthan? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... aureus (PDB entry 4f4i ; Midwest Center for Structural Genomics, unpublished work), Burkholderia thailandensis (PDB entry 3v9p ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Ehrlichia chaffeensis (PDB entry 3ld9 ; Leibly et al., 2011 [Leibly ... |
| 6 | 3lb5 | 3r6f, 3p0t, 3oxk, 3o0m | http://onlinelibrary.wiley.com/doi/10.1111/febs.12330/full | Structural characterization of human histidine triad nucleotide-binding protein 2, a member of the histidine triad superfamily | 2013 | KM Maize, CR Wagner, BC Finzel - FEBS Journal, 2013 - Wiley Online Library | ... conformational change from an 'open' to a 'closed' form during catalysis [eg Protein Data Bank (PDB) code: 3BL9 ... proteins that have not been described or compared in the literature (ie PDB structures: 1XQU, 1Y23, 2EO4, 2OIK, 3ANO, 3IMI, 3I4S, 3124, 3LB5, 3L7X, 3KSV ... |
| 7 | 3laa | - | http://scitation.aip.org/content/aip/journal/jcp/139/19/10.1063/1.4830404 | Multiscale multiphysics and multidomain models—Flexibility and rigidity | 2013 | K Xia, K Opron, GW Wei - The Journal of chemical physics, 2013 - scitation.aip.org | ... The conventional dogma of sequence-structure-function2 has been seriously challenged by the ...Structures 1DF4 and 2Y7L (top) represent the high scoring structures, those with scores near 0.9. Structures 2Y7L and 3LAA (bottom) show the typical pattern for correlation scores based on parameter values for the majority of proteins. ... |
| 8 | 3laa | - | http://scripts.iucr.org/cgi-bin/paper?mh5193 | Selecting soluble/foldable protein domains through single-gene or genomic ORF filtering: structure of the head domain of Burkholderia pseudomallei antigen | 2015 | LJ Gourlay, C Peano, C Deantonio - Section D: Biological , 2015 - scripts.iucr.org | ... 1 [link] , Supplementary Tables S1 and S2). The 1.8 resolution crystal structure of BPSL2063Xtal was solved by molecular replacement using the structure of BpaA (PDB entry 3laa ; Edwardset al., 2010 [Edwards, TE, Phan, I., Abendroth, J., Dieterich, SH, Masoudi, A ... |
| 9 | 3laa | - | http://archive.hshsl.umaryland.edu/handle/10713/3641 | Functional Analysis of the Polymorphic Membrane Protein Family of Chlamydia | 2013 | V Grinblat-Huse - 2013 - archive.hshsl.umaryland.edu | ... The trimeric autotransporter adhesin head domain [RCSB indentifier 3LAA] from Burkholderia pseudomallei and the outer membrane adhesin/invasin [RCSB identifier 1K24] from Neisseria meningitidis were also used to attempt a structure prediction ... |
| 10 | 3laa | - | http://www.pnas.org/content/109/51/20907.short | Complete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria | 2012 | MD Hartmann, I Grin? - Proceedings of the ?, 2012 - National Acad Sciences | ... was conducted with symmetry constraints; the membrane anchor was modeled by using the Hia membrane anchor domain (PDB ID code ... Comparable interaction patterns can be observed for a HIM2 in the partial Burkholderia pseudomallei TAA head structure 3LAA (17) (Fig. ... |