SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 6nbo - https://www.sciencedirect.com/science/article/pii/S0269749120364927 Purification, characterization, and catalytic mechanism of N-Isopropylammelide isopropylaminohydrolase (AtzC) involved in the degradation of s-triazine 2021 N Zhou, J Wang, W Wang, X Wu- Environmental Pollution, 2021 - Elsevier The structural architecture of AtzC resembled that of cytosine deaminase in class III Purification and structural characterization of AtzE produced by the model bacterium Pseudomonas sp and substrate specificity of AtzC were studied, and the function, structure , and evolutionary
2 3si9 3qfe https://www.sciencedirect.com/science/article/pii/S0300908418301767 Dihydrodipicolinate synthase is absent in fungi 2018 S Desbois, UP John, MA Perugini- Biochimie, 2018 - Elsevier Bacillus clausii, 3E96, Bartonella henselae, 3SI9 , [41] 2C) compared to the head-to-head architecture observed for bacterial tetramers (Fig. 2B). Recently, a crystal structure of a putative fungal DHDPS ( PDB ID: 3QFE) has been deposited in the Protein Data Bank ( PDB ) (Fig
3 3u0g 4whx https://www.sciencedirect.com/science/article/pii/S0300908418303626 Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum 2019 EY Bezsudnova, KM Boyko, AY Nikolaeva, YS Zeifman- Biochimie, 2019 - Elsevier The results of independent MD simulations were qualitatively the same. 2.11. Structural analysis of the fold type IV PLP-dependent enzymes. Proteins which are structurally similar to TaTT were collected from the PDB bank using the structure similarity search module... similar short distance between the tyrosine OH group and the O3 atom of PLP was found in the BCAT structure from Burkholderia pseudomallei (PDB ID: 3U0G, 4WHX).
4 6ok4 4lsm, 4k9d https://www.sciencedirect.com/science/article/pii/S0300908421000249 Structure determination and analyses of the GAPDH from the parasite Schistosoma mansoni, the first one from a platyhelminth 2021 S Boreiko, M Silva, J Iulek- Biochimie, 2021 - Elsevier The GAPDH’s structures selected for sequence alignment were from: Brugia malayi, Bmal - PDB ID: 4K9D ... and Chlamydia trachomatis, Ctra - PDB ID: 6OK4 [66]
5 5i4m - https://www.sciencedirect.com/science/article/pii/S0304389421000765 Zn2+-dependent enhancement of Atrazine biodegradation by Klebsiella variicola FH-1 2021 J Zhang, X Wu, X Zhang, H Pan, JES Shearer- Journal of Hazardous, 2021 - Elsevier chloromuconate to generate maleylacetate (Cmara et al., 2008). As a major structural component in the cell wall, peptidoglycan plays important roles in cell growth. Studies have shown that three zinc-dependent endopeptidases
6 5vxt - https://www.sciencedirect.com/science/article/pii/S0304389422001923 Construction of Biomimetic Nanozyme With High Laccase-and Catecholase-like Activity for Oxidation and Detection of Phenolic Compounds 2022 J Wang, R Huang, W Qi, R Su, Z He- Journal of Hazardous Materials, 2022 - Elsevier Herein, inspired by the similar structure of active site in laccase and catecholase, a novel We expect this finding is beneficial to better understanding the structure -activity relationship ... Scheme 1. Schematic illustration of the synthesis of the I-Cu nanozyme with laccase- and catecholase-like activity by mimicking their catalytic center. (PDB code is 1KYA and 5VXT).
7 4ol9 - https://www.sciencedirect.com/science/article/pii/S0304416519301382 Genome-wide survey and crystallographic analysis suggests a role for both horizontal gene transfer and duplication in pantothenate biosynthesis pathways 2019 B Khanppnavar, R Chatterjee, GB Choudhury- et Biophysica Acta (BBA, 2019 - Elsevier helix in the N-terminal domain (H2, residues 3341) which is typically absent in other well-characterized KPRs such as Escherichia coli (1KS9), S. aureus (4YCA), and M. tuberculosis ( 4OL9 ) (C) Cartoon representation of crystal structure of PaKPR in PDB accession, 5ZIK, 5ZIX
8 3ijp - https://www.sciencedirect.com/science/article/pii/S0304416520302610 Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus 2021 S Pote, S Kachhap, NJ Mank, L Daneshian- et Biophysica Acta (BBA, 2021 - Elsevier This paper focuses on structural and mechanistic studies of DapB The structure for DapB has been determined from various bacterial species including Escherichia coli [14], Bartonella henselae [15 Fig. 2. (A) Tetrameric assembly of DapB from V. vulnificus ( PDB ID: 5TEN)
9 4ywj 5bnt, 6bac, 6amy, 5ha4, 6amz, 7skb https://www.sciencedirect.com/science/article/pii/S0304416523000181 The coordinated action of the enzymes in the L-lysine biosynthetic pathway and how to inhibit it for antibiotic targets 2023 S Muduli, S Karmakar, S Mishra- Biochimica et Biophysica Acta (BBA), 2023 - Elsevier (a) The trimeric structure of the CgDapD enzyme ( PDB ID: 5E3P). Two monomers are shown in (b) The crystal structure of the CgDapD enzyme in monomeric form ( PDB ID: 5E3Q),
10 3s99 - https://www.sciencedirect.com/science/article/pii/S037811191930160X Identification and characterization of ABC transporters for carbohydrate uptake in Thermus thermophilus HB8 2019 M Chandravanshi, A Sharma, PD Gupta, SK Mandal- Gene, 2019 - Elsevier substantiate the relationship of TTHV089 with XBPs, its three-dimensional tertiary structure was predicted All the programs utilized XBP from E. coli (EcXBP, PDB id: 3M9W, open Further, the structural homology search using the predicted model of TTHV089 shows that apart