Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
7SZP	2021	0
7SZS	2021	0
7SZV	2021	0
7T24	2021	0
7T29	2021	0
7T35	2021	0

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	4z9n	-	http://rnajournal.cshlp.org/content/24/11/1530.short	Signal transduction-dependent small regulatory RNA is involved in glutamate metabolism of the human pathogen Bordetella pertussis	2018	K Keidel, F Amman, I Bibova, J Drzmisek, V Benes- RNA, 2018 - rnajournal.cshlp.org	Besides its role in the stabilization of the RNA duplexes, Hfq can also actively remodel the structure of RNAs and increase or decrease the stability of BLAST search unveiled that the BP3831 protein exhibits high homology with the entry 4Z9N in the PDB protein database
2	4z9n	-	https://link.springer.com/article/10.1007/s00253-018-9073-7	Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics	2018	M Otzen, C Palacio, DB Janssen- Applied microbiology and biotechnology, 2018 - Springer	4282 5 1154 Acyl-CoA dehydrogenase 42, Thermus thermophilus 1.3.99.2 2DVL 2532 28 1031 ABC transporter, amino acid binding protein 59, Brucella ovis 4Z9N 3504 39 1922 Serine protein kinase 77, E. coli 2.7.11.1 P0ACY5
3	4ziy	-	https://www.tandfonline.com/doi/abs/10.1080/07391102.2021.1908913	Identification of novel multitarget antitubercular inhibitors against mycobacterial peptidoglycan biosynthetic Mur enzymes by structure-based virtual screening	2021	M Kumari, N Subbarao- Journal of Biomolecular Structure and, 2021 - Taylor & Francis	extracted eight protein templates: 1GG4, 2AM1, 3ZM5, 4CVK, 4QDI, 4QDI, 4QF5 and 4ZIY , which identity best model with the low RMS value of superposition using Swiss- pdb viewer (Guex The modeled 3D structure of Mur enzymes showed close similarity to 3D crystal protein
4	4zju	-	https://www.sciencedirect.com/science/article/pii/S1476927123000208	Computational docking investigation of phytocompounds from bergamot essential oil against Serratia marcescens protease and FabI: Alternative pharmacological	2023	KB Lokhande, A Tiwari, S Gaikwad, S Kore- Biology and Chemistry, 2023 - Elsevier	Also, the binding cavity information of the FabI model was taken from the template structure PDB ID: 4ZJU complexes with NAD crystal ligand and the binding cavity of the FabI model
5	4zju	-	https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13686	Ternary complex formation of AFN1252 with Acinetobacter baumannii FabI and NADH: Crystallographic and biochemical studies	2020	NK Rao, V Nataraj, M Ravi- Chemical Biology &, 2020 - Wiley Online Library	6AHE) with the NAD bound AbFabI ( PDB :4JZU) (243 C atoms; PDB ; 4ZJU ),showed an rms Structural superposition revealed no major conformational changes except in The crystal structure of AbFabI in the ternary complex is similar to the reported structures of EcFabI
6	4zju	4zr8, 5ha4	https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1451387	Screening of Potential Lead Molecules Against Prioritized Targets of Multi-Drug Resistant Acinetobacter Baumannii- Insights From Molecular Docking, Molecular Dynamic	2018	S Skariyachan, M Manjunath- Biomolecular Structure, 2018 - Taylor & Francis	Fourteen potential drug targets were screened based on their functional role in various biosynthetic pathways and the 3D structures of 9 The study suggests that the aforementioned lead candidates and targets can be used for structure -based drug screening towards MDR A
7	4zju	-	https://www.sciencedirect.com/science/article/pii/S0968089617318217	A Novel Series of Enoyl Reductase Inhibitors Targeting the ESKAPE Pathogens, Staphylococcus aureus and Acinetobacter baumannii	2017	J Kwon, T Mistry, J Ren, ME Johnson- Bioorganic & Medicinal, 2017 - Elsevier	and AbFabI. These enzymes share a high sequence identity (45% identity) and structural similarity (RMSD for all residues < 1 when the various crystal structures of SaFabI are overlaid with the crystal structure of AbFabI). As a
8	4zju	-	https://onlinelibrary.wiley.com/doi/abs/10.1111/mmi.13950	Structure and substrate specificity of ketoacylacyl carrier protein synthase III from Acinetobacter baumannii	2018	WC Lee, MC Jeong, Y Lee, C Kwak- Molecular, 2018 - Wiley Online Library	detailed structures of FAS-related proteins from A. baumannii are still lacking except for the unpublished structure of FabI ( PDB ID: 4ZJU ). To our knowledge, the AbKAS III structures KAS III orthologs, whereas only one is found in the A. baumannii genome. Our structure and
9	4zju	-	http://scholarworks.csun.edu/handle/10211.3/200116	Battling Antibiotic Resistance by Investigation of Acinetobacter baumannii Enoyl Acyl Carrier Protein Reductase	2018	C Wong - 2018 - scholarworks.csun.edu	The active site residues of abFabI in green ( PDB ID: 4ZJU , ecFabI in blue ( PDB ID: 5CFZ) and InhA in magenta ( PDB ID: 4TRM) overlay relatively Bacterial Species Year Representative PDB ID FabI homologs are similar in sequence, but the structure of their active sites may
10	5b8f	3qxz, 3i3f	https://scholarworks.iupui.edu/handle/1805/13161	Analysis of Pseudo-Symmetry in Protein Oligomers and its Correlation with Protein Dynamics	2017	K Shankar - 2017 - scholarworks.iupui.edu	... In fig.5.1, the protein with pdb code 1e9g is used to illustrate the structures generated to achievethe calculation. ... Fig. 5.2.: Structure Index in dimer 1e9g: Structural alignment of chain A with chainB generates A and chain B with A generates B. The difference between newly ...