We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SOB | 2022 | 5 |
| 7SOC | 2022 | 8 |
| 7SOD | 2022 | 1 |
| 7SOE | 2021 | 2 |
| 7SOF | 2021 | 6 |
| 7SSQ | 2023 | 0 |
| 7STZ | 2022 | 3 |
| 7SWH | 2021 | 0 |
| 7SWK | 2021 | 0 |
| 7SY9 | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4yet | 4f2n | https://onlinelibrary.wiley.com/doi/abs/10.1002/minf.201900052 | Tropical and Subtropical Parasitic Diseases: Targets for a New Approach to Virtual Screening | 2019 | MJR Yunta, RC Dietrich- Molecular informatics, 2019 - Wiley Online Library | The most stable extended geometry was always used as the starting structure in all SODb2 (glycosomial), 2GOJ for Plasmodium Falci- parum Fe-SODb1 (cytosolic) and 4YET for Babesia Starting water molecules positions were those published in the corresponding PDB library |
| 2 | 4yk1 | - | http://www.superfri.org/superfri/article/view/171 | High performance computing with coarse grained model of biological macromolecules | 2018 | EA Lubecka, AK Sieradzan, C Czaplewski- Supercomputing, 2018 - superfri.org | The source code in the UNRES package with Fortran 90 has the following directory structure : unres (main program modules, source NucB (110 residues, single chain, PDB code: 5OMT), BID domain of Bep6 (137 residues, single chain, PDB code: 4YK1 ), CDI complex |
| 3 | 4yk1 | 4yk2, 4yk3 | https://www.frontiersin.org/articles/10.3389/fmicb.2019.00921/abstract | Versatility of the BID domain: Conserved function as type-IV-secretion-signal and secondarily evolved effector functions within Bartonella-infected host cells | 2019 | A Wagner, C Tittes, C Dehio- Frontiers in microbiology, 2019 - frontiersin.org | BID fold is highlighted through superposition of the three solved BID domains: BroBep6_tBID1 (green; PDB : 4YK1 ), BclBep9_tBID1 (cyan; PDB : 4YK2), and BheBepE_BID1 (purple; PDB : 4YK3 into ancestral tBIDs found in the canonical FIC-OB-BID architecture and derived |
| 4 | 4yl5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093009/ | Essential Metabolic Routes as a Way to ESKAPE from Antibiotic Resistance | 2020 | ALC Barra, CD Lvia de Oliveira, LG Moro- Frontiers in Public, 2020 - ncbi.nlm.nih.gov | ID 2I5B (23)], Thermus thermophilus ( PDB ID 1UB0), A. baumannii ( PDB ID 4YL5 ), Bacteroides thetaiotaomicron tuberculosis (3O63), and for the bifunctional enzyme from Candida glabrata [ PDB IDs 3NL2 No crystal structure of an ESKAPE pathogen, ThiE, is available to date |
| 5 | 4ylg | - | http://www.nature.com/nature/journal/vaop/ncurrent/full/nature16940.html | Cryo-EM structure of the yeast U4/U6. U5 tri-snRNP at 3.7 resolution | 2016 | THD Nguyen, WP Galej, X Bai, C Oubridge - Nature, 2016 - nature.com | ... 4: Secondary structure of the snRNAs in tri-snRNP. ... S. pombe ILS spliceosomal complex 19, 20(red, PDB 3JB9), was overlaid on GDPs found in other guanine-nucleotide binding proteins(grey, PDB coordinates: 1DAR, 2E1R, 2WRI, 1Z0I, 5CA8, 1XTQ, 4YLG, 1SF8, 5BXQ ... |
| 6 | 4ywj | 5bnt, 6bac, 6amy, 5ha4, 6amz, 7skb | https://www.sciencedirect.com/science/article/pii/S0304416523000181 | The coordinated action of the enzymes in the L-lysine biosynthetic pathway and how to inhibit it for antibiotic targets | 2023 | S Muduli, S Karmakar, S Mishra- Biochimica et Biophysica Acta (BBA), 2023 - Elsevier | (a) The trimeric structure of the CgDapD enzyme ( PDB ID: 5E3P). Two monomers are shown in (b) The crystal structure of the CgDapD enzyme in monomeric form ( PDB ID: 5E3Q), |
| 7 | 4ywj | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25574 | Coil conversion to strand induced by dimerization | 2018 | J Laibe, A Caffrey, M Broutin, S Guiglion- Proteins: Structure, 2018 - Wiley Online Library | CATH: an expanded resource to predict protein function through structure and sequence -strand interfaces, standard - strand interfaces and domains in CATH (based on PDB release: July 01 interface including a salt bridge between E226-A and H232-B ( 4YWJ ) B. Dimorphic |
| 8 | 4ywj | 4f3y, 3ijp | https://portlandpress.com/biochemj/article-abstract/475/1/137/50160 | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher-order assembly | 2018 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2018 - portlandpress.com | DHDPR from a total of nine bacterial species, whereas no plant DHDPR structures were previously and X-ray crystallography to demonstrate how small elements of secondary structure are able Additionally, we use kinetic assays and an analysis of the structural flexibility of the |
| 9 | 4z9n | - | https://link.springer.com/article/10.1007/s00253-018-9073-7 | Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics | 2018 | M Otzen, C Palacio, DB Janssen- Applied microbiology and biotechnology, 2018 - Springer | 4282 5 1154 Acyl-CoA dehydrogenase 42, Thermus thermophilus 1.3.99.2 2DVL 2532 28 1031 ABC transporter, amino acid binding protein 59, Brucella ovis 4Z9N 3504 39 1922 Serine protein kinase 77, E. coli 2.7.11.1 P0ACY5 |
| 10 | 4z9n | - | http://rnajournal.cshlp.org/content/24/11/1530.short | Signal transduction-dependent small regulatory RNA is involved in glutamate metabolism of the human pathogen Bordetella pertussis | 2018 | K Keidel, F Amman, I Bibova, J Drzmisek, V Benes- RNA, 2018 - rnajournal.cshlp.org | Besides its role in the stabilization of the RNA duplexes, Hfq can also actively remodel the structure of RNAs and increase or decrease the stability of BLAST search unveiled that the BP3831 protein exhibits high homology with the entry 4Z9N in the PDB protein database |