We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KI9 | 2021 | 0 |
| 5TEW | 2016 | 0 |
| 5UXW | 2018 | 0 |
| 2MZY | 2015 | 0 |
| 3R9Q | 2011 | 0 |
| 4Z0T | 2015 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6bfu | 6q04, 6nb3, 6q05, 6q07, 6nb4, 6nb7, 6q06 | https://www.biorxiv.org/content/10.1101/2020.07.16.207308v3.abstract | Systematic modeling of SARS-CoV-2 protein structures | 2020 | SI O'Donoghue, A Schafferhans, N Sikta, C Stolte- bioRxiv, 2020 - biorxiv.org | CoV, 82% identity, E = 10-24) with a fold not seen in any other PDB structure (CATH 3.40 from SARS-CoV-2, 98% identity, E = 10-44), all with beta barrel architecture (CATH 2.40 6acg from SARS-CoV, 77% identity, E = 10-321), of which one structure also showed |
| 2 | 3qi6 | 6cja | https://www.nature.com/articles/s41598-020-71756-7 | Catalytic specificity of the Lactobacillus plantarum cystathionine -lyase presumed by the crystallographic analysis | 2020 | Y Matoba, M Noda, T Yoshida, K Oda, Y Ezumi- Scientific Reports, 2020 - nature.com | The reverse transsulfuration pathway, which is composed of cystathionine -synthase (CBS) and cystathionine -lyase (CGL), plays a role to synthesize l-cysteine using l-serine and the sulfur atom in l-methionine. A plant-derived lactic acid bacterium Lactobacillus plantarum SN35N |
| 3 | 5vnx | 3qhx | https://www.sciencedirect.com/science/article/pii/S0022283620306033 | Crystallographic Snapshots of the Dunathan and Quinonoid Intermediates provide Insights into the Reaction Mechanism of Group II Decarboxylases | 2020 | SC Gayathri, N Manoj- Journal of Molecular Biology, 2020 - Elsevier | Previously, we reported the biochemical characterization and the crystal structure of an archaeal type-I transferase superfamily and displays the characteristic three-domain architecture of the PLP aldehyde bound form (apoMjDCPLP ALD , non-covalently bound, PDB ID: 3F9T |
| 4 | 3rd5 | - | https://link.springer.com/article/10.1007/s42535-020-00140-7 | In silico structural analysis and ligand-binding predictions of a few developmental stage specific-proteins during in vitro morphogenesis in Vanilla | 2020 | M Sultana, G Gangopadhyay- Vegetos, 2020 - Springer | The crystal structure of anoxidoreductase protein (a putative uncharacterized protein from Mycobacterium paratuberculosis, PDB ID- 3RD5 ) was used as a template to predict the three dimensional model (Fig. 5e) of it. The predicted docking model (Fig |
| 5 | 3gwc | - | https://pubs.acs.org/doi/abs/10.1021/acsomega.0c01224 | dUMP/F-dUMP Binding to Thymidylate Synthase: Human Versus Mycobacterium tuberculosis | 2020 | K Gaurav, T Adhikary, P Satpati- ACS omega, 2020 - ACS Publications | Thymidylate synthase is an enzyme that catalyzes deoxythymidine monophosphate (dTMP) synthesis from substrate deoxyuridine monophosphate (dUMP). Thymidylate synthase of Mycobacterium tuberculosis (... (a) X-ray structure of MtbThyX (homotetramer; monomeric units are in yellow, cyan, green and purple, PDB 3GWC(16)). Each ligand-binding site (out of four) is at the intersection of three monomeric units. |
| 6 | 3h7f | - | https://scripts.iucr.org/cgi-bin/paper?rr5190 | Extending the scope of coiled-coil crystal structure solution by AMPLE through improved ab initio modelling | 2020 | JMH Thomas, RM Keegan, DJ Rigden- Section D: Structural, 2020 - scripts.iucr.org | This led to the solution of five new structures ( PDB entries 2v71, 3cvf, 3h7f , 3mqc and 3trt) in As an example, PDB entry 3mqc failed to solve using default models (Fig 3b), through an ensemble that included substantial common helical structure with deviation at either end (Fig |
| 7 | 6q06 | 3sia | https://www.mdpi.com/2076-393X/8/4/587 | Host Receptors of Influenza Viruses and CoronavirusesMolecular Mechanisms of Recognition | 2020 | N Sriwilaijaroen, Y Suzuki- Vaccines, 2020 - mdpi.com | A CoV structure with S and HE spikes and positions of S1-NTD and S1-CTD on the S IAVs from avians, either wild birds or domestic birds, typically prefer the 2, 3Sia terminal This representative viral HA is from pdb ID of 3ube, which showed a 2009 pandemic HA in complex... Side view of a surface diagram of a trimeric CoV S protein (pdb: 6q06 [148]) |
| 8 | 3sw5 | 3fq3 | https://link.springer.com/article/10.1134/S0006297920030086 | Effect of Structure Variations in the Inter-subunit Contact Zone on the Activity and Allosteric Regulation of Inorganic Pyrophosphatase from Mycobacterium tuberculosis | 2020 | RS Romanov, SA Kurilova, AA Baykov- Biochemistry (Moscow, 2020 - Springer | of Ec PPase [15, 16], and bound L malate was found in the crystal struc ture of PPase from Bartonella henselae ( PDB ID 3SW5 ) Furthermore, modification of the subunit contact zones does not change the oligomeric structure of Mt PPase, but makes it less compact, as shown |
| 9 | 3u0g | - | https://www.mdpi.com/2073-4344/10/9/1024 | Counterbalance of Stability and Activity Observed for Thermostable Transaminase from Thermobaculum terrenum in the Presence of Organic Solvents | 2020 | EY Bezsudnova, AY Nikolaeva, SY Kleymenov- Catalysts, 2020 - mdpi.com | the hydration shell and the interface of the enzyme molecules, thus defining the balance between the structural integrity and Somewhat counterintuitively, crystallographic studies of solvent-resistant enzymes did not reveal significant changes in structures obtained from crystals |
| 10 | 6ar7 | - | https://www.mlsb.io/papers/MLSB2020_Learning_Super-Resolution_Electron_Density.p... | Learning Super-Resolution Electron Density Map of Proteins using 3D U-Net | 2020 | B Mullick, Y Wang, P Yadav, AB Farimani - mlsb.io | The mesh grid displays the electron density surface for the structure and the underlying line diagram represents the protein structure from the PDB file. (a) The electron density map of PDB ID: 6AR7 (Green), with resolution of 2.10 |