We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8F8U | 2022 | 0 |
| 8EWA | 2022 | 0 |
| 8EK7 | 2022 | 0 |
| 8EGN | 2022 | 0 |
| 8EGM | 2022 | 0 |
| 4Z0T | 2015 | 0 |
| 4YWN | 2015 | 0 |
| 8EGL | 2022 | 0 |
| 8EES | 2022 | 0 |
| 8DV0 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vm8 | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007904 | Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites | 2020 | AP Perlinska, A Stasiulewicz- PLOS Computational, 2020 - journals.plos.org | depicted with rainbow coloring (TrmD, PDB ID: 4yvg), (B) unknotted methyltransferase (Trm5, PDB ID: 2zzm On the top of this it was shown that the structure of the knotted core Different conformations of the ligand imply differences in both structural and chemical characteristics of |
| 2 | 3gbz | - | https://pubs.rsc.org/en/content/articlehtml/2020/me/c9me00097f | How evolution designs functional free energy landscapes of proteins? A case study on emergence of regulation in CDK family kinases. | 2020 | Z Shamsi, D Shukla- Molecular Systems Design & Engineering, 2020 - pubs.rsc.org | structures of CDK2 ( PDB ID: 5OSM, 6Q3F, 6Q4A, 6Q4B, 6Q4C, 6Q4D, 6Q4K), G/CDK ( PDB ID: 3GBZ ), and pfpk5 structures are native-like based on GA341 score and have comparable DOPE score with CDK2 native structure as shown in PDB ID for CMGI for native CDK2 score |
| 3 | 5dld | - | https://scripts.iucr.org/cgi-bin/paper?ir5017 | Structural characterization of a nonhydrolyzing UDP-GlcNAc 2-epimerase from Neisseria meningitidis serogroup A | 2020 | NK Hurlburt, J Guan, H Ong, H Yu, X Chen- Section F: Structural, 2020 - scripts.iucr.org | The 9 9 loop in NmSacA also contains a 310-helix, which is not observed in the E. coli structure . The structures of other epimerases with ligands bound in the active site, including those from Burkholderia vietnam- iensis ( PDB entry 5dld ; 48.7% identity; Seattle Structural |
| 4 | 3p96 | - | https://pure.unamur.be/ws/files/51548461/publi_marinum_postprint.pdf | researchportal. unamur. be | 2020 | E Pierson, J Wouters - pure.unamur.be | avium (MavSerB, based on the surrounding residues in PDB structures 5JLR and 5JLP) are The superimposition of MmaSerB2 model with the structures of MavSerB 3P96 and |
| 5 | 3o2e | - | https://portlandpress.com/bioscirep/article-abstract/doi/10.1042/BSR20202956/226... | Sinorhizobium meliloti YrbA binds divalent metal cations using two conserved histidines | 2020 | T Roret, G Alloing, JM Girardet, T Perrot- Bioscience, 2020 - portlandpress.com | protein structures found in the protein databank, we tentatively attributed the changes to the Interestingly, a structure of a BolA_H from the pathogen Coxiella burnetii ligating a Co atom was solved in the frame of a structural genomic initiative for drug design, deposited in ...The coordinates of A. thaliana, B. bovis, and C. burnetii BolA proteins are from previous crystal structures (PDB entries 4PUG, 4PUH, 4PUI, 3O2E and 3TR3) |
| 6 | 4ot8 | - | https://pubs.acs.org/doi/abs/10.1021/acschembio.0c00753 | l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate | 2020 | P Kumar, A Meza, JM Ellis, GA Carlson- ACS Chemical, 2020 - ACS Publications | l-Threonine transaldolases (lTTAs) are a poorly characterized class of pyridoxal-5-phosphate (PLP) dependent enzymes responsible for the biosynthesis of diverse -hydroxy amino acids... The structure was solved by molecular replacement with a distantly related serine hydroxymethyltransferase (PDB ID: 4OT8, 28.2% identity |
| 7 | 6an0 | - | https://www.mdpi.com/2076-2607/8/5/732 | The Role of Gene Elongation in the Evolution of Histidine Biosynthetic Genes | 2020 | S Del Duca, S Chioccioli, A Vassallo, LM Castronovo- Microorganisms, 2020 - mdpi.com | 6AN0 Elizabethkingia anophelis Amino acid sequences from HisA/HisF, IGPD, and HDH, available in the PDB , were downloaded from UniProt [29], aligned using BioEdit [30] through the ClustalW tool [31], and the conservation of the secondary structure organization was |
| 8 | 6bfu | - | https://journals.asm.org/doi/abs/10.1128/jvi.01301-20 | Cryo-electron microscopy structure of the swine acute diarrhea syndrome coronavirus spike glycoprotein provides insights into evolution of unique coronavirus spike | 2020 | H Guan, Y Wang, V Perulija, AFUH Saeed- Journal of, 2020 - Am Soc Microbiol | HCoV-NL63 ( PDB accession number 5SZS); (C) S trimer of the deltacoronavirus PdCoV ( PDB accession number 6BFU ); (D) S bronchitis virus (IBV) ( PDB accession number 6CV0); (E) S trimer of the betacoronavirus SARS-CoV ( PDB accession number 5X58 (F) Structure of the |
| 9 | 4h3e | - | http://www.publish.csiro.au/ch/ch19346 | The Crystal Structure of the Manganese Superoxide Dismutase from Geobacillus stearothermophilus: Parker and Blake (1988) Revisited | 2020 | JJ Adams, CJ Morton, MW Parker- Australian Journal of Chemistry, 2020 - CSIRO | determined primarily by X-ray crystallography, although one SOD structure has been SODs have also been determined from Pseudomonas putida (ovalis) ( PDB ID: 1dto acidocaldarius (1b06), [ 27 ] Acanthamoeba castellanii (6j55), [ 28 ] Trypanosoma cruzi ( 4h3e ), [ 29 ] Vigna |
| 10 | 6nb7 | - | https://www.mdpi.com/796898 | Nicotinic cholinergic system and COVID-19: in silico identification of an interaction between SARS-CoV-2 and nicotinic receptors with potential therapeutic targeting | 2020 | K Farsalinos, E Eliopoulos, DD Leonidas- International journal of, 2020 - mdpi.com | amino acid transporter ( PDB id: 6M18), the structure of a neutralizing to ( PDB id: 6NB7 ) and the extracellular domain of the nAChR 9 subunit in complex with -bungarotoxin ( PDB id: |