We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KI9 | 2021 | 0 |
| 5TEW | 2016 | 0 |
| 5UXW | 2018 | 0 |
| 2MZY | 2015 | 0 |
| 3R9Q | 2011 | 0 |
| 4Z0T | 2015 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6q05 | - | https://www.sciencedirect.com/science/article/pii/S1093326320305672 | Exploring the intrinsic dynamics of SARS-CoV-2, SARS-CoV and MERS-CoV spike glycoprotein through normal mode analysis using anisotropic network | 2021 | S Majumder, D Chaudhuri, J Datta, K Giri- Journal of Molecular Graphics, 2021 - Elsevier | 2.1. Protein structure retrieval. All the X-ray crystal structures for SARS-CoV-2, SARS-CoV and MERS-CoV S proteins in the lying state were taken from protein data bank [21]. The corresponding PDB IDs are 6VXX, 5X58 and 6Q05 respectively [11,22,23] |
| 2 | 3u0d | - | https://www.sciencedirect.com/science/article/pii/S1093326321000309 | Acute phase 1-acid glycoprotein as a siderophore-capturing component of the human plasma: A molecular modeling study | 2021 | SA Samsonov, F Zsila, M Maszota-Zieleniak- Journal of Molecular, 2021 - Elsevier | JavaScript is disabled on your browser. Please enable JavaScript to use all the features on this page. Skip to main content Skip to article |
| 3 | 3lrf | - | https://www.sciencedirect.com/science/article/pii/S1093326323001638 | Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches | 2023 | E Albayrak, S Koer, O Mutlu- Journal of Molecular Graphics and Modelling, 2023 - Elsevier | FabB from Vibrio cholerae ( PDB ID: 4XOX ) was selected as a template structure with 57.46% identity for the homology modeling. After modeling, GMQE (Global Model Quality Estimate) ... |
| 4 | 4h4g | - | https://www.sciencedirect.com/science/article/pii/S1096717617303658 | Combination of type II fatty acid biosynthesis enzymes and thiolases supports a functional -oxidation reversal | 2018 | JM Clomburg, SC Contreras, A Chou, JB Siegel- Metabolic, 2018 - Elsevier | The PDB codes for the 10 matches with the lowest E-values are 4H4G , 1U1Z, 4I83, 2OKH, 1ZHG, 3D6X, 2GLL, 3B7J, 1Z6B, and For ACP, the structure coordinated from an established structure of ACP bound to the homologous protein FabA was used ( PDB code: 4KEH) |
| 5 | 3sbx | - | https://www.sciencedirect.com/science/article/pii/S1097276519302606 | (p) ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch | 2019 | YE Zhang, RL Brentsen, T Fuhrer, U Sauer, K Gerdes- Molecular cell, 2019 - Elsevier | marinum showing similarity to the PpnN core domain and determined in the presence of adenosine monophosphate (AMP) ( PDB : 3SBX , Figure S3 Vibrio cholerae and Idomarina baltica, at a similar position to the phosphate of AMP in the M. marinum structure , suggesting that |
| 6 | 6d8w | - | https://www.sciencedirect.com/science/article/pii/S1201971219304175 | Molecular insights into evolution, mutations and receptor-binding specificity of influenza A and B viruses from outpatients and hospitalized patients in | 2020 | FX Ivan, X Zhou, SH Lau, S Rashid, JSM Teo- International Journal of, 2020 - Elsevier | Structural analyses of receptor-binding specificity Then, sialotrisaccharide 3'SLN and 6'SLN isolated from co-crystallized HA-ligand structures in Protein Data Bank ( PDB ) were respectively used as the avian and human receptor analogs to assess receptor-binding |
| 7 | 4wi1 | 4olf | https://www.sciencedirect.com/science/article/pii/S1319016418300240 | Inverse docking based screening and identification of protein targets for Cassiarin alkaloids against Plasmodium falciparum | 2018 | A Negi, N Bhandari, BRK Shyamlal- Saudi Pharmaceutical, 2018 - Elsevier | In order, to find the active site on those structure which does not contain co-crystallise ligand, active site finder tool was used to identify the active patches Protein, PDB , Res 4WI1 , 1.65, 1-(4-fluorophenyl)-3-[4-(4-fluorophenyl)-1-methyl-3-(trifluoromethyl)-1H-pyrazol-5-yl]-urea, 0.501 |
| 8 | 4npc | - | https://www.sciencedirect.com/science/article/pii/S135951132100088X | Characterization of xylitol 4-dehydrogenase from Erwinia aphidicola and its co-expression with NADH oxidase in Bacillus subtilis | 2021 | M Li, W Zhu, Q Meng, M Miao, T Zhang- Process Biochemistry, 2021 - Elsevier | XDH, EC 1.1.1.B19) catalyzes the interconversion of xylitol and l-xylulose [11], and its primary structure is highly Computer simulation and analysis facilitated the extraction of potential structural information, which may help us further investigate the catalytic mechanism of XDH ... and the crystal structure of sorbitol dehydrogenase from Brucella suis as a template (PDB ID: 4NPC). The quality of the model was evaluated using the SAVES server. Molecular docking was conducted using Autodock |
| 9 | 4wi1 | - | https://www.sciencedirect.com/science/article/pii/S135964461730538X | Drug targeting of one or more aminoacyl-tRNA synthetase in the malarial parasite Plasmodium falciparum | 2018 | M Yogavel, R Chaturvedi, P Babbar, N Malhotra- Drug discovery today, 2018 - Elsevier | HF, yellow PDB ID: 4YDQ), glyburide (violet, PDB ID: 5IFU), TCMDC-124506 (orange, PDB ID: 4WI1 ) and modeled Takeda compound B (green, PDB ID: 5VAD Among these, benzoxaboroles target the editing site of Pf-LRS cyto effectively and the crystal structure for the |
| 10 | 4twr | - | https://www.sciencedirect.com/science/article/pii/S1367593120301289 | Molecular evolution and functional divergence of UDP-hexose 4-epimerases | 2020 | S Fushinobu- Current Opinion in Chemical Biology, 2020 - Elsevier | Figure 3. Structural basis for the substrate specificity of group 1b and group 2b enzymes The rotated conformation structure was obtained using the S124A/Y149F double mutant ... Substrate-free structures of GalEs from Bacillus anthracis (BAS5114, PDB: 2C20) and Brucella abortus (PDB: 4TWR) are also available in the database |