We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
Structure | Year released | #citations |
---|---|---|
7KM9 | 2021 | 2 |
7SOC | 2022 | 7 |
7SOB | 2022 | 3 |
7SO9 | 2022 | 9 |
7SOA | 2022 | 2 |
7SOD | 2022 | 1 |
# | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
---|---|---|---|---|---|---|---|
1 | 3qk8 | 3q1t | https://repository.library.northeastern.edu/files/neu:m044c4387/fulltext.pdf | Functional Characterization of Structural Genomics Proteins through Computed Chemical Properties, Graph Representation of Active Sites, and Biochemical | 2018 | CL Mills - 2018 - search.proquest.com | These five proteins were purified separately using the same protocol: two putative enoylCoA hydratases from Streptomyces avermitilis (PDB 3GKB, gene echA1; PDB 3H0U, gene echA2), putative 3-hydroxybutyryl-CoA dehydratase from Rhodopseudomonas palustris (PDB 3HIN, gene RPA1786), putative enoyl-CoA hydratase from Mycobacterium avium (PDB 3Q1T, gene MAV_3574), and putative enoyl-CoA hydratase from Mycobacterium marinum (PDB 3QK8, gene echA15). |
2 | 2kwl | 2l4b | http://etheses.whiterose.ac.uk/id/eprint/7720 | Cloning, expression and characterisation of the starter module from indanomycin biosynthesis | 2014 | SR Derrington - 2014 - etheses.whiterose.ac.uk | Both structure calculations produced comparable structures for IdmK. The structure 137 4.5 Structure determination using NMR spectroscopy ..... 139 4.5.1 Initial analysis of the suitability of IdmK for structural studies by NMR ... Further validation was carried by comparison with known canonical acyl carrier protein folds (PDB codes: 1HY8, 1T8K, 1VKU, 2AVA, 2CGQ, 2GDW, 2KOO, 2KWL and 2L0Q) (X |
3 | 3n5o | - | http://proteinsf.jbc.org/highwire/filestream/2190/field_highwire_a_download_vars... | The Impact of Nitric Oxide Toxicity on the | 2013 | G Ricci, MWP Federici, PG Board, D Bovi, ML Bello… - 2013 - ASBMB | ... The structural and electrostatic properties of Cys-based GSTs and Ser-based GSTs provide theexplanation for their lower affinity for DNDGIC. ... The comparison between the only availablecrystallographic structure of a DNGIC-GST complex (human GSTP1-1, PDB id: 1ZGN ... |
4 | 3gtd | 3tv2, 3rd8 | http://www.teses.usp.br/teses/disponiveis/60/60136/tde-23052019-093047/en.php | Mapeamento das bases estruturais e suas correlaes com patogenias humanas associadas mutaes na fumarase humana | 2018 | MAA Aleixo - 2018 - teses.usp.br | HsFH crystal structure was solved at 1.8 resolution and identified HEPES molecules complexed with the FumC (1YFE);Saccharomyces cerevisiae (strain ATCC 204508 / S288c) FH (1YFM); Rickettsia prowazekii FH ( 3GTD ), Mycobacterium tuberculosis PDB Protein Data Bank |
5 | 4lsm | - | http://rei.biblioteca.ufpb.br/jspui/handle/123456789/4020 | O proteoma estrutural anterior ao ltimo ancestral universal comum e suas implicaes para a evoluo das primeiras protenas | 2017 | B DO , I Jernimo - 2017 - rei.biblioteca.ufpb.br | With the accretion of the new parts in the structure , the catalytic function emerged. Also it is suggested that the initial structural motifs RMSD: Root-Mean-Square Deviation (Raiz do Desvio Quadrtico Mdio) PDB : Protein Data-Base (Banco de Dados de Protenas) |
6 | 3m1x | 3gp3 | https://pdfs.semanticscholar.org/b88b/677bceb020a7b157a866e774007d27e673e9.pdf | Expanding molecular modeling and design tools to non-natural sidechains. | 2012 | D Gfeller, O Michielin, V Zoete - J Comput Chem. 2012 Jul 5;33(18):1525-35. | Supplementary Figures 1JBO, 1KTP, 1PHN, 1QGW, 1XF6, 1XG0, 2BV8, 2C77, 2V8A, 2VJH, 2VJT, 3BRP, 3DBJ, 3O18, 3O2C |
7 | 3qhx | - | http://pubs.acs.org/doi/abs/10.1021/acs.jafc.7b02391 | Structural Insights into Substrate Specificity of Cystathionine -Synthase from Corynebacterium glutamicum | 2017 | HY Sagong, KJ Kim - Journal of agricultural and food chemistry, 2017 - ACS Publications | ... protein mass was 2.13 3 Da 1 with a solvent content of approximately 42.27%.(17) The structure of CgMetB was determined by molecular replacement with the CCP4 version of MOLREP,(18) with the structure of MetB from M. ulcerans ( PDB code 3QHX ) used as ... |
8 | 3k9w | 3pxu | https://indigo.lib.uic.edu/handle/10027/9998 | Characterization of Phosphopantetheine Adenylyltransferase: A Potential, Novel, Antibacterial Target | 2013 | T Wubben - 2013 - indigo.lib.uic.edu | ... PDB Protein Data Bank PEG polyethylene glycol PhP 4'-phosphopantetheine Pi orthophosphate ...root mean standard deviation rpm revolutions per minute SAR structure-activity relationship ...thermodynamic, and structural characterization of M.tuberculosis and B.anthracis PPAT ... |
9 | 4nbr | - | https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bio... | SCOT: Rethinking the Classification of Secondary Structure Elements | 2019 | T Brinkjost, C Ehrt, O Koch, P Mutzel- Bioinformatics, 2019 - academic.oup.com | -bulge which leads to a kinked (highlighted in green) -helical structure in 4nbr @ pdb (chain A for SCOT and SHAFT for the structure pair 4k20@ pdb and 5cna@ pdb results from based assignment methods except for SHAFT are the most robust ones regarding structure quality |
10 | 2kz0 | - | http://search.proquest.com/openview/3f94657ea37d3e9d72f2c6f284f4d53a/1?pq-origsi... | Effects of Mutating the PPAR Subfamily Specific Residueson Basal Dimerization with RXR | 2012 | KV Moore - 2012 - search.proquest.com | entropy is the entropy distance for the subfamily, and the protein sequence position is the position of the amino acids found on model 2KZ0 of Protein Data Bank ( PDB ). Figure 1.1 Figure 2.2. Schematic Representation of the Domain Structure of PPARs. Page 25. 12 |