We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7K43 | 2021 | 65 |
| 6NB6 | 2019 | 75 |
| 6WPT | 2020 | 92 |
| 6WPS | 2020 | 146 |
| 6VYB | 2020 | 917 |
| 6VXX | 2020 | 1370 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3i4e | 3eol, 3p0x, 3e5b, 3oq8 | https://ubir.buffalo.edu/xmlui/handle/10477/79369 | Mechanistic Insights into the Catalytic Mechanism and Inhibition of Mycobacterium Tuberculosis Isocitrate Lyase | 2019 | S Ray - 2019 - ubir.buffalo.edu | an attractive target for drug development. 1.4.3 Structure of ICL Aspergillus nidulans [ PDB ID: 1DQU],67 M. tuberculosis [ PDB ID: 1F61, 1F8I, 1F8M, 5DQL],68- 69 Escherichia coli [ PDB ID:1IGW]70, Burkholderia pseudomallei [ PDB ID: 3I4E (paper |
| 2 | 4o3v | 4nhf, 4lso, 4kz1 | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840375/ | VirB8-like protein TraH is crucial for DNA transfer in Enterococcus faecalis | 2016 | C Fercher, I Probst, V Kohler - Scientific , 2016 - ncbi.nlm.nih.gov | ... A structure-based homology search revealed that TraH is related to proteins of the VirB8 family,which all exhibit a ... PDB code 4NHF, 14% sequence identity), Bartonella quintana (PDB code 4LSO,6% sequence identity), Rickettsia typhi (PDB code 4O3V, 19% sequence ... |
| 3 | 3glq | 3n58 | http://www.sciencedirect.com/science/article/pii/S0141813017311510 | S-adenosyl-L-homocysteine hydrolase from a hyperthermophile (Thermotoga maritima) is expressed in Escherichia coli in inactive formBiochemical and structural | 2017 | K Brzezinski, J Czyrko, J Sliwiak - International Journal of , 2017 - Elsevier | ... tuberculosis [10], Bradyrhizobium elkanii [11], Burkholderia pseudomallei ( PDB entry 3GLQ ; unpublished), Brucella ... Recently, the first crystal structure of SAHase from the hyperthermophilic Thermotoga maritima ... active form has been determined and deposited in the PDB in the ... |
| 4 | 3gvg | 4g1k | http://repositorio.unesp.br/handle/11449/138506 | Production, characterization and structural analysis of proteins from Corynebacterium pseudotuberculosis and snake venoms | 2015 | R Masood - 2015 - repositorio.unesp.br | ... Structural alignment among different TIMs (3TA6, 3GVG, 1YYA, 1B9B, 4G1K and 2BTM) indicate that they are very similar to each other (Fig. 19). Alignment of C. pseudotuberculosis TIM with TIM (PDB code 3TA6) from Mycobacterium tuberculosis shows a very slight difference in the loop region as shown in the figure 19 A as they share 67% sequence identity and 0.4 RMSD value. . ... |
| 5 | 3h81 | 3njd, 3qk8, 3qka, 3q1t, 3pe8, 3p85, 3p5m, 3ome, 3oc7, 3myb, 3moy, 3he2 | http://iris.lib.neu.edu/chemistry_diss/57/ | Computational studies of enzyme function and dynamics | 2012 | P Yin - 2012 - iris.lib.neu.edu | ... Page 20. 19 List of Abbreviations Abbreviation Meaning CSA Catalytic Site Atlas PDB Protein Data Bank THEMATICS Theoretical Microscopic Titration Curves POOL Partial Order Optimal Likelihood ? Angstr?ms ?C Degrees Celsius ESR Electron Spin Resonance NMR ... |
| 6 | 3pk0 | 3rih | http://atrium.lib.uoguelph.ca/xmlui/handle/10214/16112 | Structural and functional characterization of the aminoacetone utilization microcompartment from Mycobacterium smegmatis MC2 155 | 2019 | E Mallette - 2019 - atrium.lib.uoguelph.ca | P)(H) - nicotninamide adenine dinucleotide (phosphate)(reduced) NTP - nucleotide triphosphate PDB - protein data bank (protein structure archive) PDU 1.2.1 Superstructure Architecture Microcompartments were first visualized in electron micrographs of carboxysome |
| 7 | 3lls | - | http://www.biochemj.org/bj/450/bj4500127.htm | Crystal structure of hexanoyl-CoA bound to beta-ketoacyl reductase FabG4 of Mycobacterium tuberculosis | 2013 | D Debajyoti, B Sudipta, R Amlan, B Rupam? - Biochemical Journal, 2013 - biochemj.org | ... The structure of the FabG4?NADH complex was determined by molecular replacement in MOLREP [21] using a monomer of the apoFabG4 structure (PDB code 3LLS). ... MtFabG1 (MabA;PDB code 1UZM) and FabG4 (PDB codes 3LLS and 3Q6I) were chosen as the receptor. ... |
| 8 | 3qdf | 3r6o, 3rr6 | http://www.biochemj.org/bj/449/bj4490051.htm | Crystal structures of Cg1458 reveal a catalytic lid domain and a common catalytic mechanism for the FAH family | 2013 | R Tingting, G Yanyan, M May, Z Wenjun? - Biochemical Journal, 2013 - biochemj.org | ... Source/description, PDB ID, Resolution (?), Sequence identity (%), Aligned residues, Backbone RMSD (?). C. glutamicum/Cg1458, 4DBF, 1.90, ?, ?, ?. 4DBH, 2.00, ?, ?, ?. Mycobacterium marinum M/MMAR-1718, 3QDF, 2.05, 56.73, 245, 1.11. ... |
| 9 | 6u94 | - | https://www.biorxiv.org/content/10.1101/2021.08.17.456619.abstract | Genome sequencing of 196 Treponema pallidum strains from six continents reveals additional variability in vaccine candidate genes and dominance of Nichols clade | 2021 | NAP Lieberman, MJ Lin, H Xie, L Shretha, T Nguyen- bioRxiv, 2021 - biorxiv.org | guided by the top 1-7 templates for each target. We used the following templates in modelling each target: TP0136 used 4a2l and 5oj5; TP0326 used 4k3b and 5d0o; TP0548 used 6h3i; TP0966 used 1yc9, 3d5k, 4k7r, 4mt0, 4mt4, 5azs, and 6u94; TP0967 used 1yc9, 3d5k, 5azp, 5azs, and 6u94. |
| 10 | 3eg4 | 3mdx, 3qxi, 3lqw, 3laa, 3oc7 | http://www.theses.fr/2015GRENM005/abes | Nouvelles méthodes de calcul pour la prédiction des interactions protéine-protéine au niveau structural | 2015 | P Popov - 2015 - theses.fr | ... au niveau structural Thèse soutenue publiquement le « 28 Janvier 2015 », devant le jury composéde : ... blue, respectively). Right: native structure of Target 58 (grey) and medium-quality model pro- ...18 2.2 Query protocols for the PDB that were used to compose the bound bench- ... |