We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7LTQ | 2021 | 0 |
| 7LV7 | 2021 | 0 |
| 7LYD | 2021 | 0 |
| 7LYY | 2021 | 0 |
| 7M2D | 2021 | 0 |
| 7M3W | 2021 | 0 |
| 7MCM | 2021 | 0 |
| 7MHB | 2021 | 0 |
| 7MHV | 2021 | 0 |
| 7MI0 | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7jv2 | 7jvc, 7jw0, 7ra8, 7ral | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1010260 | Structural and antigenic variations in the spike protein of emerging SARS-CoV-2 variants | 2022 | A Mittal, A Khattri, V Verma- PLoS Pathogens, 2022 - journals.plos.org | Recent structural and functional studies have mapped the -CoV-2 variants; (2) the structural basis for antibody-mediated fitness, and in conjunction with the structures of the spike-nAb ... the neutralization mechanism involves direct competition with the ACE2 receptor. These antibodies include C002 (PDB: 7K8S) [70], C104 (PDB: 7K8U) [70], S2H13 (PDB: 7JV2) [77], C119 (PDB: 7K8U) [70], C121 (PDB: 7K8X) [70], LY-CoV555 (PDB: 7KMG), DH1041 (7LAA), COVA2-15 (EMD-22061) [82], 2–43 (EMD-22275) [94], |
| 2 | 3k9w | - | https://www.sciencedirect.com/science/article/pii/S1570963919300469 | Structural and binding studies of phosphopantetheine adenylyl transferase from Acinetobacter baumannii | 2019 | A Gupta, PK Singh, N Iqbal, P Sharma- et Biophysica Acta (BBA, 2019 - Elsevier | PDB ID: 3ND5; 12), HpPPAT ( PDB ID: 3NV7; 13), BpPPAT ( PDB ID: 3K9W ; 14), CbPPAT ( PDB ID: 4F3R; unpublished), PaPPAT ( PDB ID: 3X1J; 15) and MaPPAT ( PDB ID: 5O06 As indicated by the structure of AbPPAT with CoA ( PDB ID: 5YH7), the ligand binding cleft |
| 3 | 3rr2 | - | http://www.sciencedirect.com/science/article/pii/S1570963913004147 | Structural and biochemical analyses of< i> Microcystis aeruginosa</i> O-acetylserine sulfhydrylases reveal a negative feedback regulation of cysteine biosynthesis | 2014 | M Lu, BY Xu, K Zhou, W Cheng, YL Jiang? - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2014 - Elsevier | ... The sequences are (PDB codes in parentheses) Mycobacterium tuberculosis OASS (2Q3D), Haemophilus influenzae OASS (1Y7L), Salmonella typhimurium OASS (1OAS), Mycobacterium marinum Atcc Baa-535 OASS (3RR2), Thermotoga maritima OASS (3FCA), Arabidopsis ... |
| 4 | 5eks | - | https://journals.asm.org/doi/abs/10.1128/jb.00248-20 | Structural and biochemical analyses reveal that chlorogenic acid inhibits the shikimate pathway | 2020 | N Neetu, M Katiki, A Dev, S Gaur, S Tomar- Journal of, 2020 - Am Soc Microbiol | replacement method using the coordinates of chain A of DHQS enzyme from Vibrio cholerae ( PDB identifier [ID]: 3OKF Structural comparison of PaDHQS structure with its homologs closer to its homologs from A. nidulans (1SG6), V. cholerae (3OKF), A. baumannii ( 5EKS ), and H |
| 5 | 3cez | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.23141/full | Structural and biochemical analysis of mammalian methionine sulfoxide reductase B2 | 2011 | FL Aachmann, GH Kwak, R Del Conte? - Proteins: Structure, Function, and Bioinformatics, 2011 - Wiley Online Library | ... coordinate files of the minimized MsrB2 family are deposited in the Protein Data Bank (PDB) under accession ... pneumoniae (3e0o),49Neisseria meningitidis (3hcg),46Methanothermobacter thermautotrophicus (2k8d), Burkholderia pseudomallei (3cez), Neisseria gonorrhoeae ... |
| 6 | 3r1i | - | http://www.jbc.org/content/early/2019/06/17/jbc.RA119.009390.short | Structural and biochemical characterization of 20-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32 | 2019 | HL Doden, RM Pollet, SM Mythen, Z Wawrzak- Journal of Biological, 2019 - ASBMB | replacement with the structure of an SDR from Mycobacterium marinum ( PDB : 3R1I ) and refined indicate these alanine substitutions did not sig- nificantly affect secondary structural elements (Fig extended N-terminus is important for second- ary and quaternary structure In both |
| 7 | 3sdo | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.13363/full | Structural and biochemical characterization of EDTA monooxygenase and its physical interaction with a partner flavin reductase | 2016 | SY Jun, KM Lewis, B Youn, L Xun - Molecular , 2016 - Wiley Online Library | ... E. Open (green) and closed (cyan) form lid domains are aligned to show conservation of secondary structure of both ... Structural homologues of EmoA. ... to EmoA showed that the highest match was NTA monooxygenase (NmoA) from Burkholderia pseudomallei ( PDB : 3SDO ) with ... |
| 8 | 5ts2 | 3pxu | https://www.sciencedirect.com/science/article/pii/S0141813019351451 | Structural and biochemical studies of phosphopantetheine adenylyltransferase from Acinetobacter baumannii with dephospho-coenzyme A and coenzyme A | 2019 | A Gupta, PK Singh, P Sharma, P Kaur, S Sharma- International journal of, 2019 - Elsevier | pseudolamelli (BpPPAT, PDB ID: 3PXU), Mycobacterium abcessus (MaPPAT, PDB ID: 5O08) and Pseudomonas aeruginosa (PaPPAT, PDB ID: 5TS2 Therefore, structure of enzyme, PPAT must be determined from the bacterium against whom specific drug has to be designed |
| 9 | 4di1 | 3moy | http://search.proquest.com/openview/9e1cbcf92f9d0d582217fdb88b682434/1?pq-origsi... | Structural and bioinformatic analysis of ethylmalonyl-CoA decarboxylase | 2015 | RL Roberts - 2015 - search.proquest.com | ... is the murine methylmalonyl-CoA decarboxylase trimer (PDB code: 1ef8), bottom right is thehuman AUH protein hexamer (PDB code: 1hzd). ... Having a 3D structure of EMCD could allowresearchers to probe the active site and intelligently design structural perturbations to ... |
| 10 | 3hhj | - | http://www.jbc.org/content/285/1/444.short | Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base | 2010 | T Nakamura, S Meshitsuka, S Kitagawa, N Abe? - Journal of Biological Chemistry, 2010 - ASBMB | ... ?, Z = 19.0) and with dGTP (BdRppH-dGTP, 3EF5, rmsd = 1.9 ?, Z = 18.3) (40) and unknown proteins from Bartonella henselae (3HHJ, rmsd = 1.8 ... ray and NMR structures in the ligand-free form and 3.5 ?for 127 C? atoms between structures in the complex form (PDB IDs: 1MUT ... |