We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KI9 | 2021 | 0 |
| 5TEW | 2016 | 0 |
| 5UXW | 2018 | 0 |
| 2MZY | 2015 | 0 |
| 3R9Q | 2011 | 0 |
| 4Z0T | 2015 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5bq2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512856/ | Structural insight into the binding of C60-derivatives with enoyl-pyruvate transferase from Helicobacter pylori | 2017 | M Teimouri, M Junaid, A Khan, H Zhang - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... BLAST, UDP-Nacetyl- glucosamine 1-carboxy-vinyl-transferase of Pseudomonas aeruginosa(PDB ID 5BQ2 ... The alignment of 5BQ2 and H. pylori Enoyl pyruvate transferase is given in Figure ...The modeled structure was superimposed on to the template, giving root mean square ... |
| 2 | 3hwi | - | http://www.springerlink.com/index/C13H461841653R88.pdf | Structural insight into the mode of interactions of SoxL from Allochromatium vinosum in the global sulfur oxidation cycle | 2012 | A Bagchi - Molecular Biology Reports, 2012 - Springer | ... like protein) from Mycobacterium tuberculosis (PDB code: 3HWI) with sequence identity of 34 %. ... The predicted structure is similar to the crystal structure of probable thiosulfate sulfurtransferase Cysa2 (rhodanese-like protein) from Mycobacterium tuberculosis (PDB code: 3HWI). ... |
| 3 | 3u0g | - | https://link.springer.com/article/10.1007/s00253-020-10369-6 | Structural insight into the substrate specificity of PLP fold type IV transaminases | 2020 | EY Bezsudnova, VO Popov, KM Boyko- Applied Microbiology and, 2020 - Springer | Due to the rigid structure of the -sheet, the residues constituting it form a peculiar mold for substrate binding. The interdomain loop (light blue) and -turn (black) of the large domain of the first subunit confine the P-pocket from the other sides PDB ID:*. X-strand 3U0G |
| 4 | 3s6d | - | http://www.sciencedirect.com/science/article/pii/S1570963916301844 | Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei | 2016 | AA Lopez-Zavala, JS Carrasco-Miranda - et Biophysica Acta (BBA , 2016 - Elsevier | ... Glycolysis is one of the most regulated metabolic pathways, however little is known about thestructural mechanisms for its regulation in non-model ... Using the DALI server [53] to look for similar structures, the root mean square deviation (RMSD) for backbone carbons between LvTIM and...P. falciparum (1WOB) 1.5 A, Coccidioides immitis (3S6D) 2.1 A |
| 5 | 4pfz | - | https://www.sciencedirect.com/science/article/pii/S0006291X19308988 | Structural insights into a maleylpyruvate hydrolase from sphingobium sp. SYK-6, a bacterium degrading lignin-derived aryls | 2019 | H Hong, H Seo, KJ Kim- Biochemical and biophysical research, 2019 - Elsevier | delta-isomerase from Mycobacterium smegmatis strain ATCC 700084 ( PDB code 4PFZ , 41% sequence The model building and structure refinement were performed as in SsMPH Apo type Mn 2+ -pyruvate have been deposited in the Protein Data Bank with PDB codes 6JVV |
| 6 | 4h51 | 4w5k, 3meb | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158402 | Structural Insights into a Novel Class of Aspartate Aminotransferase from Corynebacterium glutamicum | 2016 | HF Son, KJ Kim - PloS one, 2016 - journals.plos.org | ... A) RMSD of reported AspAT structures were analyzed. PDB code 1SPA; Escherichia coli, 7AAT; Gallus gallus (cytosolic), 2CST; Gallus gallus (mitochondrial), 3PD6; Mus musculus, 4W5K; Trypanosoma brucei, 1AJR; Sus scrofa, 3MEB; Gaiardia lamblia, 1YAA; Saccharomyces cerevisiae, 4H51; Leishmania major, 3K7Y; Plasmodium falciparum, ... |
| 7 | 5cy4 | - | http://rnajournal.cshlp.org/content/early/2019/03/29/rna.070557.119.abstract | Structural insights into nanoRNA degradation by human Rexo2 | 2019 | LY Chu, S Agrawal, YP Chen, WZS Yang, HS Yuan- RNA, 2019 - rnajournal.cshlp.org | 6A4E), or deposited in the protein data bank, including those from E. coli ( PDB codes: 1YTA, 2IGI), Acinetobacter baumannii ( PDB code: 5CY4 ), and Haemophilus influenzae ( PDB code 1J9A) Structural coordinates and diffraction structure factors of Rexo2-RNA, Rexo2-DNA1 |
| 8 | 3ek2 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.22581/full | Structural insights into Staphylococcus aureus enoyl-ACP reductase (FabI), in complex with NADP and triclosan | 2010 | A Priyadarshi, EEK Kim? - Proteins: Structure, Function, and Bioinformatics, 2010 - Wiley Online Library | ... A. aeolicus FabI (PDB ID 2P91) in green, M. tuberculosis FabI (PDB ID 3FNH) in light green, B. napus FabI (PDB ID 1D7O) in cyan, E. coli FabI (PDB ID 2FHS) in pink, P. falciparum FabI (PDB ID 2OP1) in red, B. pseudomallei FabI (PDB ID 3EK2) in orange, and B. anthracis FabI ... |
| 9 | 3qhx | - | http://pubs.acs.org/doi/abs/10.1021/acs.jafc.7b02391 | Structural Insights into Substrate Specificity of Cystathionine -Synthase from Corynebacterium glutamicum | 2017 | HY Sagong, KJ Kim - Journal of agricultural and food chemistry, 2017 - ACS Publications | ... protein mass was 2.13 3 Da 1 with a solvent content of approximately 42.27%.(17) The structure of CgMetB was determined by molecular replacement with the CCP4 version of MOLREP,(18) with the structure of MetB from M. ulcerans ( PDB code 3QHX ) used as ... |
| 10 | 3k2h | - | http://pubs.acs.org/doi/abs/10.1021/ci300196g | Structural insights into the molecular basis of the ligand promiscuity | 2012 | N Sturm, J D?saphy, RJ Quinn, D Rognan? - Journal of Chemical Information and Modeling, 2012 - ACS Publications | ... To this purpose, we exploited the information in the Protein Data Bank (PDB)19 to identify ligands involved in complexes with different proteins. ... MATERIALS AND METHODS Identification in the sc-PDB of promiscuous ligands and their targets ... |