Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
7KI9	2021	0
5TEW	2016	0
5UXW	2018	0
2MZY	2015	0
3R9Q	2011	0
4Z0T	2015	0

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	3iew	3k2x	https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c00877	Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery	2020	AE Wakefield, C Yueh, D Beglov- Journal of Chemical, 2020 - ACS Publications	Binding hot spots are regions of proteins that, due to their potentially high contribution to the binding free energy, have high propensity to bind small molecules. We present benchmark sets for te...
2	4wi1	-	https://www.mdpi.com/1422-0067/21/11/3803	Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches	2020	DW Nyamai, Tastan Bishop- International Journal of Molecular, 2020 - mdpi.com	(B) 2D representation of (a) SANC184; (b) SANC257; (c) SANC264; (d) SANC456; (e) SANC622 (f) TCMDC-124506 ( PDB ID: 4WI1 ); (g) glyburide ( PDB ID: 5IFU SANC236 ligand was unstable during the 20 ns simulation with structure flips at 10, 30, 95, 160, and 180 ns of the
3	4wi1	-	https://www.preprints.org/manuscript/202010.0576	Phytochemical, biological and computational investigations of Erythrina fusca Lour. to assess antimalarial property against Plasmodium falciparum	2020	SA Sazed, O Islam, SL Bliese, MRH Hossainey - 2020 - preprints.org	All these sub structures impose a chemical structure that has a resemblance only with phaseolin Phaseolin) was subjected to molecular docking study against various proteins of Pf (4plz, 4qt2,4r1e, 4r6w, 4wi1 , 4zxg, 5e16, 5jaz, 5k8s, 5znc, 6aqs, 6ee4, 6fba and 6i4b pdb id
4	4xwi	-	https://www.tandfonline.com/doi/abs/10.1080/14756366.2020.1751150	A study of Rose Bengal against a 2-keto-3-deoxy-d-manno-octulosonate cytidylyltransferase as an antibiotic candidate	2020	S Kim, S Jo, MS Kim, DH Shin- Journal of enzyme inhibition and, 2020 - Taylor & Francis	The atomic coordinates of the crystal structure of PaKdsB ( PDB ID: 4XWI ) were saved from the Protein Data Bank and prepared by The crystal structure of PaKdsB deposited in the Protein Data Bank was retrieved and docked with Rose Bengal to predict its binding mode
5	4zju	-	https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13686	Ternary complex formation of AFN1252 with Acinetobacter baumannii FabI and NADH: Crystallographic and biochemical studies	2020	NK Rao, V Nataraj, M Ravi- Chemical Biology &, 2020 - Wiley Online Library	6AHE) with the NAD bound AbFabI ( PDB :4JZU) (243 C atoms; PDB ; 4ZJU ),showed an rms Structural superposition revealed no major conformational changes except in The crystal structure of AbFabI in the ternary complex is similar to the reported structures of EcFabI
6	5b8i	-	https://www.sciencedirect.com/science/article/pii/S1570963919300445	Fungal Lanosterol 14-demethylase: A target for next-generation antifungal design	2020	BC Monk, AA Sagatova, P Hosseini, YN Ruma- et Biophysica Acta (BBA, 2020 - Elsevier	cerevisiae LDM as a template ( PDB 4LXJ), suggested that crystal structure of the catalytic domain of human CYP51 ( PDB calcineurinB in complex with FK506 ( 5B8I ); S. cerevisiae Elf2
7	5bt8	-	https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200302	Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea	2020	M Rojas-Pirela, D Andrade-Alvirez- Open, 2020 - royalsocietypublishing.org	bacteria, PGK, monomer, open, , 6I06, [39]. Acinetobacter baumannii, bacteria, PGK, monomer, , , 5BT8 , Fairman et al. (NA) Figure 3. Three-dimensional structure of phosphoglycerate kinase. (a) Ribbon representation of the overall structure of pig muscle PGK ( PDB : 1HDI)
8	5cy4	-	https://academic.oup.com/nar/article-abstract/48/10/5572/5828917	Human REXO2 controls short mitochondrial RNAs generated by mtRNA processing and decay machinery to prevent accumulation of double-stranded RNA	2020	M Szewczyk, D Malik, LS Borowski- Nucleic acids, 2020 - academic.oup.com	Here, we report comprehensive functional, biochemical, and structural studies to elucidate REXO2 function in human mitochondria We also demonstrate that REXO2 degrades RNA in a structure - and sequence-dependent manner. ... The model that was used for molecular replacement was oligoribonuclease from Acinetobacter baumnii (PDB ID: 5CY4, Seattle Structure Genomics Centre for Infectious Diseases), which shares 48.3% sequence identity with REXO2.
9	5cy4	-	https://munin.uit.no/handle/10037/17279	A functional and structural study of three bacterial nucleic acid-interacting proteins. The story of a Ferric Uptake Regulator, an Oligoribonuclease and an ATP	2020	K Berg - 2020 - munin.uit.no	Acinetobacter baumannii (PDB 5CY4) and E. coli (PDB code 1YTA )[148]. All Orn homologs are structurally similar and topologically arranged
10	5dd7	-	https://repository.up.ac.za/handle/2263/77810	Structural and inhibition studies of thiamine monosphosphate kinase from Mycobacterium tuberculosis	2020	LS Dlamini - 2020 - repository.up.ac.za	OT Oxythiamine PDB Protein data bank 38 Figure 3.5: Crystal structure of MtbThiL homodimer ..... 40 bind to both free enzyme and the ES complex. Detailed structural information particularly high resolution crystal structures of substrate