SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3qhx 3qi6 https://www.mdpi.com/2079-3197/9/3/32 Pharmacophore-Guided Identification of Natural Products as Potential Inhibitors of Mycobacterium ulcerans Cystathionine -Synthase MetB 2021 SK Kwofie, NNO Dolling, E Donkoh, GM Laryea, L Mosi- Computation, 2021 - mdpi.com For the study, chain A of each 3D crystal structural coordinate file was used. Two experimentally elucidated structures of CGS MetB from M. ulcerans are available. The structure with PDB ID 3QI6 is bound covalently to PLP (cofactor) and the other with PDB ID 3QHX is bound
2 3und - http://scripts.iucr.org/cgi-bin/paper?tt5043 Structure of 2-keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase from Pseudomonas aeruginosa 2013 SK Nelson, A Kelleher, G Robinson? - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org ... Biochemistry, 40, 6326-6334.] ), with 69% sequence similarity, Burkholderia pseudomallei (PDB entry 3und ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), with 64% sequence identity, and Aquifex aeolicus (PDB entry 1fwt ; Ackerman & Gatti ...
3 3obk 3sth, 3ujh http://www.tandfonline.com/doi/abs/10.1517/17460441.2012.729036 Screening for small molecule inhibitors of Toxoplasma gondii 2012 S Kortagere - Expert opinion on drug discovery, 2012 - Taylor & Francis ... A screening for protein targets in T. gondii, for which a crystal structure is available and a ...3OBK Crystal structure of delta-aminolevulinic acid dehydratase (porphobilinogen synthase) from T. gondii ME49 in complex with the reaction product porphobilinogenr ...
4 3mc4 - http://www.sciencedirect.com/science/article/pii/S1570963914001836 Crystal structure of serine acetyl transferase from< i> Brucella abortus</i> and its complex with coenzyme A 2014 S Kumar, N Kumar, N Alam, S Gourinath - Biochimica et Biophysica Acta ( , 2014 - Elsevier ... max SAT [10] have been previously published. The coordinates of a crystal structure of SAT from Brucella melitensis has also been deposited at the Protein Data Bank (PDB code: 3MC4). SATs from E. coli, B. melitensis, H. influenzae ...
5 4q04 - https://link.springer.com/article/10.1007/s12551-020-00766-6 Structural and functional diversity of Entamoeba histolytica calcium-binding proteins 2020 S Kumar, S Mishra, S Gourinath- Biophysical Reviews, 2020 - Springer 78% identical). Here, along with the reported structures of amoebic CaBP1, CaBP2, CaBP3, and CaBP5, we have complied the structural information of an unpublished structure of EhCaBP19 ( PDB deposited) as well. In this
6 2ke0 - http://www.ingentaconnect.com/content/ben/cmc/2010/00000017/00000015/art00005 In silico prediction of binding sites on proteins 2010 S Leis, S Schneider, M Zacharias - Current medicinal chemistry, 2010 - ingentaconnect.com ... 15 Leis et al. Table 3. Protein Test Structures pdb entry molecule state ligand Rmsd (?)b 2ANO E.coli dihydrofolate reductase bound Inh. MS-SH08-17 0 ... 1FKS_2VCD 1FKS based on 2VCD structure homology --- 2.3 1FKS_2KE0 1FKS based on 2KE0 structure homology --- 2.6 ...
7 3jvi - https://link.springer.com/protocol/10.1007/978-1-0716-0163-1_1 In Silico Laboratory: Tools for Similarity-Based Drug Discovery 2020 S Lenik, J Konc- Targeting Enzymes for Pharmaceutical Development, 2020 - Springer The output file 1phrA_3jviA.0.rota. pdb contains 3jvi's coordinates superimposed onto 1phr according to Information window contains the name, PDB , and UniProt number of the clicked amino acid Sequence variants that could not be mapped to the protein structure are listed
8 3qdf 4qku, 3rr6, 4maq, 4pfz, 3r6o http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b00050 Crystal structures of apo and liganded 4-oxalocrotonate decarboxylase uncover a structural basis for the metal-assisted decarboxylation of a vinylogous -keto acid 2016 SL Guimares, JB Coitinho, DMA Costa, SS Arajo - Biochemistry, 2016 - ACS Publications ... Analysis of the crystal structures implicates a lid domain in substrate binding and suggests roles for ... Representative tertiary and quaternary structures of enzymes from (A) Mus musculus (PDB entry 1QCN(30)) and Burkholderia cenocepacia (PDB entry 4QKU); (B) Sulfolobus solfataricus (PDB entry 2Q18(32)); (C) Mycobacterium marinum (PDB entry 3QDF(39)) ...
9 5unb - https://www.biorxiv.org/content/early/2018/11/06/463554.abstract NEPRE: a Scoring Function for Protein Structures based on Neighbourhood Preference 2018 S Liu, X Xiang- bioRxiv, 2018 - biorxiv.org Based on the testing results and the comparison with several other structure assessment methods, we report that the neighborhood structural correctness. MATERIALS AND METHODS composed of 14,647 PDB structures , which were selected from the NCBI VAST (the vector
10 5idw - http://onlinelibrary.wiley.com/doi/10.1002/1873-3468.12683/full Structure and characterization of a NAD (P) Hdependent carbonyl reductase from Pseudomonas aeruginosa PAO1 2017 S Li, X Teng, L Su, G Mao, Y Xu, T Li, R Liu - FEBS , 2017 - Wiley Online Library ... monomer contains a large central -sheet of seven -strands that is flanked by three -helices on one side and four -helices on the other, forming a sandwich structure (Fig. ... The closest homologue is the Burkholderia vietnamiensis oxidoreductase ( PDB ID: 5IDW ; Z score 27.2 ...