We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7LA1 | 2021 | 0 |
| 7LBJ | 2021 | 0 |
| 7LDA | 2021 | 0 |
| 7LL6 | 2021 | 0 |
| 7LTQ | 2021 | 0 |
| 7LUY | 2021 | 0 |
| 7LV7 | 2021 | 0 |
| 7LYD | 2021 | 0 |
| 7LYY | 2021 | 0 |
| 7M2D | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5i7w | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/jeu.12834 | Characterization of Cystathionine Synthase TtCbs1 and Cysteine Synthase TtCsa1 Involved in Cysteine Biosynthesis in Tetrahymena thermophila | 2020 | H Lv, J Xu, T Bo, W Wang- Journal of Eukaryotic Microbiology, 2020 - Wiley Online Library | TtCsa1 has more than 30% sequence identities with B. abortus CS ( PDB ID: 5JIS) (Dharavath et al. 2017), B. suis CS ( PDB ID: 5I7W ), and L. major CS ( PDB ID: 4AIR) (Fyfe et al. 2012), and we modeled the overall structure of TtCsa1 with these crystal structures |
| 2 | 3ngj | - | http://www.jbc.org/content/295/2/597.short | Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1, 3-butanediol | 2020 | T Kim, PJ Stogios, AN Khusnutdinova, K Nemr- Journal of Biological, 2020 - ASBMB | DERA structures as the best matches, including the Entamoeba histolytica DeoC ( PDB code 3NGJ ; Z score RMSD, 0.6 ; 66% sequence identity), and L. brevis DERA E78K mutant ( PDB code 4XBS; Z Based on the BH1352 structure , its active site is located inside of the -barrel |
| 3 | 5i1f | - | https://www.mdpi.com/1422-0067/21/1/280 | GTP Preference of d-Glycero--d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis | 2020 | S Kim, MS Kim, S Jo, DH Shin- International Journal of Molecular, 2020 - mdpi.com | 2). In the case of GalU from Burkholderia vietnamiensis (BvGalU, PDB ID: 5I1F ), there are two In contrast, some of AMPPN bound structures can be searched in the PDB ( PDB ID: 5KQ8 an induced-fit conformational change when they interact with GMPPN in the crystal structure |
| 4 | 5ez3 | - | https://www.mdpi.com/1422-0067/21/15/5391 | Characterization of the Proteins Involved in the DNA Repair Mechanism in M. smegmatis | 2020 | A Di Somma, C Can, A Moretta, A Cirillo- International journal of, 2020 - mdpi.com | The primary structure of the recombinant protein was verified by MALDI mapping strategy (Supplementary Materials, Table S4) and its correct folding assessed by circular The Acyl-CoA dehydrogenase from Brucella melitensis in complex with FAD ( PDB code 5EZ3 A) was |
| 5 | 5t8s | - | https://www.biorxiv.org/content/10.1101/622068v2.full.pdf | MCSS-based Predictions of Binding Mode and Selectivity of Nucleotide Ligands | 2020 | R Gonzalez-Aleman, N Chevrollier, M Simoes- bioRxiv, 2020 - biorxiv.org | method based on a coarse-grained model (RNA-LIM) was developed to model the structure of an on the protein-nucleotide complexes currently available in the Protein Data Bank (RCSB PDB (52 less than 2.0 and thus not representative of the currently available structural data |
| 6 | 5eks | - | https://journals.asm.org/doi/abs/10.1128/jb.00248-20 | Structural and biochemical analyses reveal that chlorogenic acid inhibits the shikimate pathway | 2020 | N Neetu, M Katiki, A Dev, S Gaur, S Tomar- Journal of, 2020 - Am Soc Microbiol | replacement method using the coordinates of chain A of DHQS enzyme from Vibrio cholerae ( PDB identifier [ID]: 3OKF Structural comparison of PaDHQS structure with its homologs closer to its homologs from A. nidulans (1SG6), V. cholerae (3OKF), A. baumannii ( 5EKS ), and H |
| 7 | 5eks | - | https://www.nature.com/articles/s41589-020-0587-9 | Architecture and functional dynamics of the pentafunctional AROM complex | 2020 | HA Veraszt, M Logotheti, R Albrecht, A Leitner- Nature Chemical, 2020 - nature.com | 2: The architecture and structural characteristics of the AROM complex. figure2. a, Definition of color scheme and order of domains in the CtAROM sequence, with gray numbers according to the succession of reactions in the pathway. b, CtAROM crystal structure with active sites ... The resulting representative PDB structures are 1NVA, 1XAL, 3QBD and 5EKS, for the DHQS |
| 8 | 5dd7 | - | https://repository.up.ac.za/handle/2263/77810 | Structural and inhibition studies of thiamine monosphosphate kinase from Mycobacterium tuberculosis | 2020 | LS Dlamini - 2020 - repository.up.ac.za | OT Oxythiamine PDB Protein data bank 38 Figure 3.5: Crystal structure of MtbThiL homodimer ..... 40 bind to both free enzyme and the ES complex. Detailed structural information particularly high resolution crystal structures of substrate |
| 9 | 5cy4 | - | https://academic.oup.com/nar/article-abstract/48/10/5572/5828917 | Human REXO2 controls short mitochondrial RNAs generated by mtRNA processing and decay machinery to prevent accumulation of double-stranded RNA | 2020 | M Szewczyk, D Malik, LS Borowski- Nucleic acids, 2020 - academic.oup.com | Here, we report comprehensive functional, biochemical, and structural studies to elucidate REXO2 function in human mitochondria We also demonstrate that REXO2 degrades RNA in a structure - and sequence-dependent manner. ... The model that was used for molecular replacement was oligoribonuclease from Acinetobacter baumnii (PDB ID: 5CY4, Seattle Structure Genomics Centre for Infectious Diseases), which shares 48.3% sequence identity with REXO2. |
| 10 | 5bt8 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200302 | Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea | 2020 | M Rojas-Pirela, D Andrade-Alvirez- Open, 2020 - royalsocietypublishing.org | bacteria, PGK, monomer, open, , 6I06, [39]. Acinetobacter baumannii, bacteria, PGK, monomer, , , 5BT8 , Fairman et al. (NA) Figure 3. Three-dimensional structure of phosphoglycerate kinase. (a) Ribbon representation of the overall structure of pig muscle PGK ( PDB : 1HDI) |