We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7U0U | 2022 | 0 |
| 7U0T | 2022 | 0 |
| 9ZK6 | 2025 | 0 |
| 7U0S | 2022 | 0 |
| 7U0O | 2023 | 0 |
| 7U0M | 2022 | 0 |
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| 7TXX | 2022 | 0 |
| 7TWZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rqi | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b00645 | A variable active site residue influences the kinetics of response regulator phosphorylation and dephosphorylation | 2016 | RM Immormino, RE Silversmith, RB Bourret - Biochemistry, 2016 - ACS Publications | ... reaction kinetics by altering access to the active site while not perturbing overall protein structure . ... Collectively, our biochemical and structural analyses indicate that position T+1 affects access to the ... (A) Surface representation of the E. coli CheY active site ( PDB entry 1fqw). ... |
| 2 | 3o0m | 4lsm | https://link.springer.com/content/pdf/10.1038/srep13652.pdf | Dimeric interactions and complex formation using direct coevolutionary couplings | 2015 | RN Dos Santos, F Morcos, B Jana, AD Andricopulo- Scientific reports, 2015 - Springer | Structural Modeling. All the homodimers used in this study were retrieved from Protein Data Bank ( PDB )60. The PDB accession code for each structure is shown in Table 1. ... Histidine triad protein 3O0M 149 ... GAPDH 4LSM 346 Gp_dh_N |
| 3 | 3v7o | 5dvw | http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005937 | The Ebola virus VP30-NP interaction Is a regulator of viral RNA synthesis | 2016 | RN Kirchdoerfer, CL Moyer, DM Abelson - PLoS , 2016 - journals.plos.org | ... the interactions of Ebola, Sudan and Marburg virus VP30 with NP using in vitro biochemistry,structural biology and cell ... here, we further compared our structures to the Reston ebolavirus(RESTV) VP30 CTD (3V7O.pdb [12]) and a more recently determined structure of the ... |
| 4 | 6bfu | - | https://www.biorxiv.org/content/10.1101/2020.02.18.955195v1.abstract | Structure and immune recognition of the porcine epidemic diarrhea virus spike protein | 2020 | RN Kirchdoerfer, M Bhandari, O Martini, LM Sewall- bioRxiv, 2020 - biorxiv.org | from HuCoV-NL63 (5SZS. pdb (Walls et al., 2016b)), Porcine deltacoronavirus ( 6BFU . pdb , (Xiong et pdb , (Kirchdoerfer et al., 2018)) and Infectious bronchitis virus (6CV0. pdb , (Shang et the PEDV spike differs in several regards to the previously determined NL63 spike structure |
| 5 | 6bfu | - | https://www.nature.com/articles/s41598-018-34171-7 | Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis | 2018 | RN Kirchdoerfer, N Wang, J Pallesen, D Wrapp- Scientific reports, 2018 - nature.com | Structural description of SARS-CoV S 2P ectodomain Structure of the SARS-CoV S 2P ectotodomain fusion peptide 24 adopts a conformation distinct from equivalent regions in (b) alpha- (HuCoV-NL63, 5SZS. pdb 20 ) and (c) deltacoronavirus spikes (PDCV S, 6BFU . pdb 21 ) as |
| 6 | 3p0x | - | https://www.nature.com/articles/s41467-019-12614-7 | Acetyl-CoA-mediated activation of Mycobacterium tuberculosis isocitrate lyase 2 | 2019 | RP Bhusal, W Jiao, BXC Kwai, J Reynisson- Nature, 2019 - nature.com | The structural resemblance of the Mtb ICL2 C-terminal domain to members of the GNAT observed in crystal structures of isocitrate-bound ICL1 from Brucella melitensis (Bm ICL1, PDB 3P0X ) of the active site loop are more similar to that found in the crystal structure of substrate |
| 7 | 6xdh | - | https://www.biorxiv.org/content/10.1101/2021.06.02.446845v1.abstract | 3D-Scaffold: Deep Learning Framework to Generate 3D Coordinates of Drug-like Molecules with Desired Scaffolds. | 2021 | RP Joshi, N Gebauer, N Kumar, M Bontha- bioRxiv, 2021 - biorxiv.org | generates 3D coordinates of the molecules with a given core structure ; (II) It works equally 3 reasonable molecules even with small training datasets due to the robust architecture of the (Mpro) and a SARS-CoV-2 non- structural protein endoribonuclease (NSP15). ... As a test case example, we generated non-covalent inhibitors for the SAR-CoV-2 non-structural protein endoribonuclease (NSP15) target (PDB ID: 6XDH) by optimizing Exebryl-1 based compounds |
| 8 | 3qbp | - | http://link.springer.com/article/10.1007/s11033-013-2885-8 | Identification of a novel fumarase C from Streptomyces lividans TK54 as a good candidate for l-malate production | 2014 | RR Su, A Wang, ST Hou, P Gao, GP Zhu? - Molecular Biology Reports, 2014 - Springer | ... The structure files of fumarases from Mycobacterium marinum (MmFum, PDB code: 3QBP) and Mycobacterium tuberculosis (MtFum, PDB code: 3NO9) were downloaded from the PDB web site (http://?www.?rcsb.?org/?pdb/?). Results and discussion. ... |
| 9 | 2mrc | 7ry7 | https://onlinelibrary.wiley.com/doi/abs/10.1155/bri/2724332 | Gene Expression, Docking and Machine Learning in Malaria Drug Discovery: A Systematic Review | 2026 | RS Dangana, IE Ebhohimen, SA Malgwi- Biochemistry, 2026 - Wiley Online Library | The last studies have used deep learning docking methods, that is, the difusion model (Targetdif), to generate and screen novel compounds using structural features of essential... Immune/inflammatory response High mobility group Box 1 (PfHMGB1 HsHMGB1) 2MRC, 1HME |
| 10 | 4q4l | - | https://pubs.acs.org/doi/abs/10.1021/acs.orglett.0c01922 | Design and Synthesis of Near-Infrared Mechanically Interlocked Molecules for Specific Targeting of Mitochondria | 2020 | RS Das, PC Saha, N Sepay, A Mukherjee- Organic, 2020 - ACS Publications | The entrapment of squaraine (SQ) within a molecular container to form rotaxane has been shown to improve the dye stability and the fluorescence proficiency inside the mitochondria. The macrocycle p... The molecular docking of MSQ with Cys exposed mitochondrial protein ATP synthase subunit beta 1 (PDB: 4Q4L), and other SH-exposed proteins showed interactions between the SH moieties and MSQ |