We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7S5M | 2021 | 0 |
| 7S5N | 2021 | 0 |
| 7S87 | 2021 | 0 |
| 7SBJ | 2021 | 0 |
| 8CXA | 2022 | 0 |
| 5SCQ | 2022 | 0 |
| 7SWH | 2021 | 0 |
| 7SWK | 2021 | 0 |
| 7SY9 | 2021 | 0 |
| 7SYB | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3oj6 | - | https://www.nature.com/articles/s41467-022-33714-x | Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine | 2022 | S Kimura, V Srisuknimit, KL McCarty, PC Dedon- Nature, 2022 - nature.com | as blasticidine-S deaminase ( PDB 3oj6 ) and cytidine deaminase ( PDB 4eg2). The structure of Blasticidine-S deaminase (BSD) is highly similar to the predicted structure of TrcP-NTD |
| 2 | 3obk | 3sth, 3ujh | http://www.tandfonline.com/doi/abs/10.1517/17460441.2012.729036 | Screening for small molecule inhibitors of Toxoplasma gondii | 2012 | S Kortagere - Expert opinion on drug discovery, 2012 - Taylor & Francis | ... A screening for protein targets in T. gondii, for which a crystal structure is available and a ...3OBK Crystal structure of delta-aminolevulinic acid dehydratase (porphobilinogen synthase) from T. gondii ME49 in complex with the reaction product porphobilinogenr ... |
| 3 | 3mc4 | - | http://www.sciencedirect.com/science/article/pii/S1570963914001836 | Crystal structure of serine acetyl transferase from< i> Brucella abortus</i> and its complex with coenzyme A | 2014 | S Kumar, N Kumar, N Alam, S Gourinath - Biochimica et Biophysica Acta ( , 2014 - Elsevier | ... max SAT [10] have been previously published. The coordinates of a crystal structure of SAT from Brucella melitensis has also been deposited at the Protein Data Bank (PDB code: 3MC4). SATs from E. coli, B. melitensis, H. influenzae ... |
| 4 | 4q04 | - | https://link.springer.com/article/10.1007/s12551-020-00766-6 | Structural and functional diversity of Entamoeba histolytica calcium-binding proteins | 2020 | S Kumar, S Mishra, S Gourinath- Biophysical Reviews, 2020 - Springer | 78% identical). Here, along with the reported structures of amoebic CaBP1, CaBP2, CaBP3, and CaBP5, we have complied the structural information of an unpublished structure of EhCaBP19 ( PDB deposited) as well. In this |
| 5 | 2ke0 | - | http://www.ingentaconnect.com/content/ben/cmc/2010/00000017/00000015/art00005 | In silico prediction of binding sites on proteins | 2010 | S Leis, S Schneider, M Zacharias - Current medicinal chemistry, 2010 - ingentaconnect.com | ... 15 Leis et al. Table 3. Protein Test Structures pdb entry molecule state ligand Rmsd (?)b 2ANO E.coli dihydrofolate reductase bound Inh. MS-SH08-17 0 ... 1FKS_2VCD 1FKS based on 2VCD structure homology --- 2.3 1FKS_2KE0 1FKS based on 2KE0 structure homology --- 2.6 ... |
| 6 | 3jvi | - | https://link.springer.com/protocol/10.1007/978-1-0716-0163-1_1 | In Silico Laboratory: Tools for Similarity-Based Drug Discovery | 2020 | S Lenik, J Konc- Targeting Enzymes for Pharmaceutical Development, 2020 - Springer | The output file 1phrA_3jviA.0.rota. pdb contains 3jvi's coordinates superimposed onto 1phr according to Information window contains the name, PDB , and UniProt number of the clicked amino acid Sequence variants that could not be mapped to the protein structure are listed |
| 7 | 5idw | - | http://onlinelibrary.wiley.com/doi/10.1002/1873-3468.12683/full | Structure and characterization of a NAD (P) Hdependent carbonyl reductase from Pseudomonas aeruginosa PAO1 | 2017 | S Li, X Teng, L Su, G Mao, Y Xu, T Li, R Liu - FEBS , 2017 - Wiley Online Library | ... monomer contains a large central -sheet of seven -strands that is flanked by three -helices on one side and four -helices on the other, forming a sandwich structure (Fig. ... The closest homologue is the Burkholderia vietnamiensis oxidoreductase ( PDB ID: 5IDW ; Z score 27.2 ... |
| 8 | 5idw | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.12683 | Structure and characterization of a NAD(P)Hdependent carbonyl reductase from Pseudomonas aeruginosa PAO1 | 2017 | S Li, X Teng, L Su, G Mao, Y Xu, T Li, R Liu- FEBS, 2017 - Wiley Online Library | NADP binding induces structural changes including the ordering of the active site specificity loop, and the presence of small molecules The native PA4079 structure was determined by molecular replacement with phaser 14 in the phenix suite 15 using PDB entry 3WXB |
| 9 | 5unb | - | https://www.biorxiv.org/content/early/2018/11/06/463554.abstract | NEPRE: a Scoring Function for Protein Structures based on Neighbourhood Preference | 2018 | S Liu, X Xiang- bioRxiv, 2018 - biorxiv.org | Based on the testing results and the comparison with several other structure assessment methods, we report that the neighborhood structural correctness. MATERIALS AND METHODS composed of 14,647 PDB structures , which were selected from the NCBI VAST (the vector |
| 10 | 4g6c | - | https://www.nature.com/articles/s41467-022-33180-5 | The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases | 2022 | S Luang, X Fernndez-Luengo, A Nin-Hill- Nature, 2022 - nature.com | In this context, our aim was to provide direct structural evidence Based on these structures , we evaluate the reactant and that of Bacteroides -glucosidase ( PDB 5JP0) harbours the Glc ... while a β-hexosaminidase from Burkholderia cenocepacia10 folds into a single-domain (α/β)8 sandwich structure. |