SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 4wbs - https://dash.harvard.edu/handle/1/33840644 An antibiotic binds to the ATPase that powers lipopolysaccharide transport 2016 JM May - 2016 - dash.harvard.edu This conclusion is supported by genetic, biochemical, and structural evidence, described below innermost layers of the cell envelope before turning our attention to the structure and assembly... though the C-terminus of E. coli LptB is not visible in the structures published by Sherman and collaborators, it is visible in the structure of Burkholderia phymatum LptB, crystallized with an N-terminal histidine tag in the absence of nucleotide (PDB: 4WBS)
2 4u7x - https://digitalcommons.augustana.edu/cgi/viewcontent.cgi?article=1028&context=bi... Mrub_3029, Mrub_2052, are predicted orthologs of b_0688, b_0394, while Mrub_0759 and Mrub_2365 are not predicted orthologs of b_1309, in Escherichia 2017 MA Benstine, D Scott, R Lori - 2017 - digitalcommons.augustana.edu Next, the Protein Data Bank ( PDB ) is accessed which gives 3-D models of protein structures our gene is found in, it helps portray how the protein is folded which helps predict function (Bernman et al, 2003) Protein Database ( 4U7X ) Crystal structure of Fructokinase from
3 5b8f 3qxz, 3i3f https://scholarworks.iupui.edu/handle/1805/13161 Analysis of Pseudo-Symmetry in Protein Oligomers and its Correlation with Protein Dynamics 2017 K Shankar - 2017 - scholarworks.iupui.edu ... In fig.5.1, the protein with pdb code 1e9g is used to illustrate the structures generated to achievethe calculation. ... Fig. 5.2.: Structure Index in dimer 1e9g: Structural alignment of chain A with chainB generates A and chain B with A generates B. The difference between newly ...
4 3rih 3uve https://link.springer.com/article/10.3103/S0027131418050085 The Role of Charged Residues in the Structural Adaptation of Short-Chain Alcohol Dehydrogenase (SDR) from Thermophilic Organisms to High Temperatures 2018 AV Popinako, MY Antonov, EY Bezsudnova- Moscow University, 2018 - Springer Protein structures from PDB database are marked with asterisk 3RIH (Mycobacterium Abscessus tion involving specific patterns of the distribution of dif- ferent residues in the structure , including their distribu- tion on the solvent-accessible molecular surface and in the protein core
5 4iuj 4p9a, 3r2v, 3khw http://www.ingentaconnect.com/contentone/ben/cdth/2017/00000012/00000002/art0000... Current Drug Design Strategies for Fighting Against Swine Influenza 2017 M Alam, S Nandi- Current Drug Therapy, 2017 - ingentaconnect.com ... In-silico docking studies are at the fore front of structure based screening and designing of emerg- ing anti-swine ... PDB IDs of Crystal Structures ... 5D8U, 5D9J, 5DEB, 5DES, 5I13, 5CXR, 5FDD, 5FDG, 4ZQQ, 4ZHZ, 4ZI0, 4YYL, 4W9S, 4P9A, 4MK1, 4MK2, 4MK5, 4IUJ , 4F7M, 4AWK ...
6 4qfh - https://www.arca.fiocruz.br/handle/icict/23073 Integrao de diferentes abordagens para a avaliao de atividade antiparasitria, propriedades ADMET e alvos celulares de novas Arilimidamidas sobre 2016 CC Santos - 2016 - arca.fiocruz.br OMS Organizao Mundial de Sade PAINS Do ingls Pan-assay Interference compounds PCR Reao em cadeia da polimerase PDB Do ingls Protein Data Bank pKa Constante de ionizao de cidos Pt Pentamidina SdpS Do ingls Spermidine synthase
7 6tz8 - https://theses.hal.science/tel-04464042/document Caractrisation de lectines de champignons opportunistes mergents et identification de nouvelles lectines partir d'extraits fongiques 2024 T CREPIN, U KRENGEL, A de Palma, GJ BOONS - theses.hal.science Cyanovirin-N (CV-N) is a small protein from the cyanobacterium Nostoc ellipsosporum that binds mannosides and possesses strong virucidal properties against a wide range of viruses (... C. neoformans (PDB ID: 6TZ8) and Coccidioides immitis (PDB ID: 5B8I) [148]. In all the fungal complexes, the overall fold of calcineurin was very similar
8 3ek2 - https://opus.uni-wuerzburg.de/opus4-wuerzburg/files/7086/Thesis_MariaHirschbeck_... Structure-based drug design on the enoyl-ACP reductases of Yersinia pestis and Burkholderia pseudomallei 2012 MW Hirschbeck - opus.uni-wuerzburg.de ... In the PDB database an apo structure of BpFabI had already been deposited (PDB code 3EK2), which was crystallized in 10% PEG 6000 and 100 mM HEPES pH 7.0. ...
9 2mj3 - https://www.duo.uio.no/handle/10852/45840 Structural and functional characterisation of ferredoxins in Bacillus cereus 2015 S Monka - 2015 - duo.uio.no ...as well as testing out models generated from several homologous PDB-structures. This server generated models from 10 PDB files (1I7H, 3AH7, 3ZYY, 1KRH, 3N9Z, 2MJ3, 3HUI, 2Y5C, 1JQ4, 2WLB15) and generated two models from each by using two different programs SCULPTURE and MOLREP. ...
10 4o5m - https://zaguan.unizar.es/record/135847 Flavoenzymes in Microbial Systems: Analysis of Structure-Function Relationships 2024 MI Minjarez Saenz, MM Medina Trullenque - zaguan.unizar.es Esta Tesis Doctoral se plante con objeto de mejorar nuestra comprensin de los mecanismos de accin especficos de especie en sistemas dependientes de flavoenzimas como