We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5SD0 | 2022 | 0 |
| 3L0D | 2009 | 0 |
| 2LHJ | 2011 | 0 |
| 5SCZ | 2022 | 0 |
| 5SCM | 2022 | 0 |
| 5SCY | 2022 | 0 |
| 3JS9 | 2009 | 0 |
| 5SCP | 2022 | 0 |
| 3IPW | 2009 | 0 |
| 5SCO | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3v9o | 3urr | https://www.biorxiv.org/content/early/2018/09/06/409730.abstract | Flexible backbone assembly and refinement of symmetrical homomeric complexes | 2018 | SSR Burman, RA Yovanno, JJ Gray- bioRxiv, 2018 - biorxiv.org | For local docking, specific symmetry definitions can be recapitulated from a PDB file of a complex About 22% of all structures are unfavorable, and all but one near-native (less than 5 number of inter-chain atom-atom clashes is 50.6, compared to 21 in the native structure |
| 2 | 4yet | 3js4 | http://www.doiserbia.nb.rs/Article.aspx?id=0352-51392100042S | Amide- interactions in active centers of superoxide dismutase | 2021 | S Stojanovi, ZZ Petrovi- Journal of the Serbian, 2021 - doiserbia.nb.rs | A, 3js4:A, 3lio:A, 3lsu:A, 3mds:A, 3pu7:A, 3tqj:A, 4br6:A, 4c7u:A, 4f2n:A, 4ffk:A, 4yet :A, 5a9g 7. Example of the structure preferred amide interactions of FeSOD from the Thermosynechococcus elongatus ( PDB code 1my6): (a) parallel-displaced and (b) T-shaped structure |
| 3 | 5t8s | - | https://bmcpharmacoltoxicol.biomedcentral.com/articles/10.1186/s40360-020-00402-... | Prospects of Indole derivatives as methyl transfer inhibitors: antimicrobial resistance managers | 2020 | S Tha, S Shakya, R Malla- BMC, 2020 - bmcpharmacoltoxicol.biomedcentral | An integration of structure -based virtual screening and ligand-based virtual screening was employed to explore the antimicrobial properties of indole The X-ray diffraction structures of S-adenosyl methionine synthase, MetK from N. gonorrhoeae ( PDB id: 5T8S ) [13]; cobA from |
| 4 | 3m4s | - | http://scripts.iucr.org/cgi-bin/paper?S0907444912050135 | Ultratight crystal packing of a 10 kDa protein | 2013 | S Trillo-Muyo, A Jasilionis, MJ Domagalski? - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... 2xge ). Cases for which the solvent content was artificially low owing to long missing N- and C-terminal fragments were not considered either (PDB entries 2xnq , 2duy , 2axo , 3bqh , 2f9l , 3m4s , 3nzl , 2xjx , 4eti , 2ds8 and 1vfq ). ... |
| 5 | 3nf4 | - | http://pubs.acs.org/doi/full/10.1021/bi4002979 | Mycobacterium tuberculosis Utilizes a Unique Heterotetrameric Structure for Dehydrogenation of the Cholesterol Side Chain | 2013 | ST Thomas, NS Sampson - Biochemistry, 2013 - ACS Publications | ... 16) FAD binding and CoA binding in published ACAD Protein Data Bank (PPDB) structures ... between FAD and several ACADs in reported crystal structures (PDB entry in ... 2WBI) and bacterial ACADS from Megsphaera elsdenii (1BUC) and Mycobacterium thermoresistibile (3NF4 ... |
| 6 | 3p0x | - | https://www.sciencedirect.com/science/article/pii/S0166685120300992 | Characterisation and structural analysis of glyoxylate cycle enzymes of Teladorsagia circumcincta | 2020 | S Umair, C Bouchet, N Palevich, HV Simpson- Molecular and Biochemical, 2020 - Elsevier | to compare the TciICL and TciMS protein sequences with deposited structures in the Protein Data Bank ( PDB ) Locations are shown of the C- and N-terminus in the predicted tertiary structure of TciICL C) and TciMS in salmon (F) within 4 of the superimposed 3P0X and 3S9Z |
| 7 | 3gwc | 4f4a, 4fkx, 4emd | http://14.139.186.108/jspui/handle/123456789/31568 | PROTEIN-LIGAND INTERACTIONS AND STRUCTURE-BASED INHIBITOR DISCOVERY | 2018 | S Usha, S Selvaraj - 2018 - 14.139.186.108 | i) Target structure A target structure experimentally determined through X-ray crystallography or NMR spectroscopy techniques and deposited in the PDB is the ideal starting point for docking. Structural genomics has accelerated the rate at which target structures are |
| 8 | 4xi8 | 4py3, 4n67, 4lu4 | https://www.theses.fr/2017SACLS452 | Structure et fonction des toxines bactriennes domaine FIC | 2017 | S Veyron - 2017 - theses.fr | proteins from Helicobacter pylori and Neisseria meningitidis, which were determined as part of Structural Genomics Initiatives in 2006 ( PDB entries 2G03 and 2F6S, which have no associated publications). However, the structure of FIC proteins only began to be discussed |
| 9 | 3r8c | 4em8, 3te8 | http://repositories.lib.utexas.edu/handle/2152/24852 | Scoring functions for protein docking and drug design | 2014 | S Viswanath - 2014 - repositories.lib.utexas.edu | ... are also found in cell membranes, which is a hydrophobic (non-polar and water-repelling) environment. Figure 1.1 shows two complexes in the Protein Data Bank (PDB)[6, 7]. Figure 1.1 (a) is a structure of soluble complex (PDB ID 3hct) [6], which is a structure of ... |
| 10 | 3r8c | 3te8 | http://onlinelibrary.wiley.com/doi/10.1002/prot.24214/full | Improving ranking of models for protein complexes with side chain modeling and atomic potentials | 2013 | S Viswanath, DVS Ravikant? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... Target PDB ID, Receptor homolog (PDB_chain): target receptor chain, Ligand homolog (PDB_chain): target ligand chain. 2xt4, 2XT2_A:B, 2XT2_A:A. 2xty, 2XTW_A:B, 2XTW_A:A. ... 3pra, 3PRB_A:B, 3PRB_A:A. 3r8c, 3R20_A:A, 3R20_A:B. 3rd6, 3Q64_A:A, 3Q64_A:B. ... |