We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8T1A | 2023 | 0 |
| 8T5J | 2023 | 0 |
| 8T5N | 2023 | 0 |
| 8T5T | 2023 | 0 |
| 8T7W | 2023 | 0 |
| 8T7Z | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vvw | - | https://www.sciencedirect.com/science/article/pii/S0024320520312194 | Comparative modeling and dynamic simulation of UDP-N-acetylmuramoyl-alanine ligase (MurC) from Mycobacterium tuberculosis through virtual screening | 2020 | MA Isa- Life Sciences, 2020 - Elsevier | The reference sequence (query sequence), searched against PDB and six proteins (1GQQ, 4HV4, 1P31, 2F00, 5VVW and 1J6U of its entire amino acids were in the most favorable region(Table 1). The G-factor of both the model of MurC, minimized model structure and the |
| 2 | 5vwm | 6ote, 6pth, 6cfp | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4633401 | Unveiling Success Determinants for Amb-Assisted Phase Expansion of Fusion Proteins in Arp/Warp | — | MC Cardona-Echavarra, C Santilln - papers.ssrn.com | In this study, the PDB was mined to obtain an up-to-date list of the FP crystallographic 103 structures of the most used protein tags: maltose binding protein (MBP), thioredoxin (TRX), |
| 3 | 5vwm | - | https://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.9b01604 | Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria | 2019 | JP Surivet, P Panchaud, JL Specklin- Journal of Medicinal, 2019 - ACS Publications | UDP-3-O-((R)-3-hydroxymyristoyl)-N-glucosamine deacetylase (LpxC) is as an attractive target for the discovery and development of novel antibacterial drugs to address the critical medical need crea... |
| 4 | 5vwm | - | https://pdfs.semanticscholar.org/1774/b2148932698ea43fe239489547556ff273f3.pdf | In silico study of various compounds from essential oil of Cymbopogon winterianus against Pseudomonas aeruginosa targets | 2019 | Moura, A Monteiro, M Maia, N Sousa, G Rodrigues - 2019 - pdfs.semanticscholar.org | Protein resolution values were 2.1 for ExoA ( PDB ID 1XK9), 1.8 for LpxC ( PDB ID 5VWM ) and 2.31 for PBP3 ( PDB ID 4KQO). All presented inhibitors coupled to their crystallographic structure , which allowed the delimitation of the active site of each protein |
| 5 | 5vwm | - | https://www.sciencedirect.com/science/article/pii/S0968089620306568 | N-Hydroxyformamide LpxC inhibitors, their in vivo efficacy in a mouse Escherichia coli infection model, and their safety in a rat hemodynamic assay | 2020 | T Furuya, AB Shapiro, J Comita-Prevoir- Bioorganic & Medicinal, 2020 - Elsevier | Fig. 2. Key interactions in the LpxC enzyme binding pocket observed in P. aeruginosa LpxCCHIR-090 (3) co-crystal structure ( PDB code: 5VWM ). We first implemented a docking model using the ICM-Pro software (Molsoft) based on the available co-crystal structures of P |
| 6 | 5vxt | - | https://www.sciencedirect.com/science/article/pii/S0304389422001923 | Construction of Biomimetic Nanozyme With High Laccase-and Catecholase-like Activity for Oxidation and Detection of Phenolic Compounds | 2022 | J Wang, R Huang, W Qi, R Su, Z He- Journal of Hazardous Materials, 2022 - Elsevier | Herein, inspired by the similar structure of active site in laccase and catecholase, a novel We expect this finding is beneficial to better understanding the structure -activity relationship ... Scheme 1. Schematic illustration of the synthesis of the I-Cu nanozyme with laccase- and catecholase-like activity by mimicking their catalytic center. (PDB code is 1KYA and 5VXT). |
| 7 | 5w25 | - | https://link.springer.com/chapter/10.1007/978-3-030-05282-9_10 | Impact of Target-Based Drug Design in Anti-bacterial Drug Discovery for the Treatment of Tuberculosis | 2019 | AC Pushkaran, R Biswas, CG Mohan- Structural Bioinformatics, 2019 - Springer | Table 3 Crystal structure of the key druggable targets in Mtb. Molecular target. Pathways involved. PDB ID. DprE1. Arabinogalactan biosynthesis AspS. Protein synthesis. 5W25 . Peptide Deformylase. Maturation of nascent polypeptides. 3E3U. DNA Gyrase |
| 8 | 5woq | - | https://www.nature.com/articles/s41586-023-06376-y | Small protein modules dictate prophage fates during polylysogeny | 2023 | JE Silpe, OP Duddy, GE Johnson, GA Beggs- Nature, 2023 - nature.com | Structural predictions and homologues predicted by the DALI server were aligned and... (b) Structural alignment of TF72 (brown) and TF63 (blue) as monomers with the highest scoring homologs: C.AhdI (green), C.BcII (orange), C.Esp1396I (pink), and ClgR (gray) (PDB ID: 1Y7Y, 2B5A, 3G5G, and 5WOQ, respectively). |
| 9 | 5woq | - | http://ijiset.com/vol5/v5s3/IJISET_V5_I03_01.pdf | In-Silico Structural & Molecular Characterization Of Clgr From Mycobacterium Tuberculosis | 2018 | YN Joshi, RD Salunkhe - ijiset.com | was obtained through SWISS MODEL server using resolution 1.8 A structure of ClgR from Mycobacterium smegmatis ( PDB Id: 5woq .2.A K, Bordoli L, Kopp J, Schwede T. The SWISSMODEL Workspace: A web-based environment for protein structure homology modelling |
| 10 | 6amz | - | https://www.sciencedirect.com/science/article/pii/S002251932030028X | Identification of potential therapeutic targets in Neisseria gonorrhoeae by an in-silico approach | 2020 | P Tanwer, SRR Kolora, A Babbar, D Saluja- Journal of Theoretical, 2020 - Elsevier | The obtained protein. pdb file was overlapped with the homologous protein whose crystal structure ( 6AMZ from Acinetobacter baumannii) was obtained from RCSB database (Berman et al., 2000). Both protein structures were overlapped using Pymol (Alexander et al., 2011) to |