We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8CTR | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CU9 | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6bla | - | https://journals.plos.org/plospathogens/article?rev=2&id=10.1371/journal.ppat.10... | Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step | 2020 | X Ye, H Su, D Wrapp, DC Freed, F Li, Z Yuan- PLoS, 2020 - journals.plos.org | A 1.8 crystal structure of 325 Fab in complex with the peptide epitope revealed the molecular determinants of 325 binding to gB A molecular replacement solution was found in PHASER [67] by using a search ensemble generated from PDB IDs: 6BLA and 6DDM. |
| 2 | 3fvb | - | http://scholarworks.gsu.edu/cgi/viewcontent.cgi?article=1054&context=chemistry_d... | I. Synthesis Of Anthraquinone Derivatives For Electron Transfer Studies In DNA. II. Characterization Of The Interaction Between Heme And Proteins. | 2011 | Y Cao - 2011 - scholarworks.gsu.edu | ... 64 Figure 3.2 (A) The active site of HSA (PDB ID 1N5U); Lys190 is in blue; (B) The active site of Mb (1WLA); Lys45 and Lys96 are in blue. ... (A) The IsdA (PDB ID: 2ITF) binding pocket; (B) the IsdC (PDB ID: 2O6P) binding pocket; (C) the Shp (PDB ID: 2Q7A) ... |
| 3 | 7jw0 | - | https://www.nature.com/articles/s41586-022-04980-y | BA. 2.12. 1, BA. 4 and BA. 5 escape antibodies elicited by Omicron infection | 2022 | Y Cao, A Yisimayi, F Jian, W Song, T Xiao, L Wang- Nature, 2022 - nature.com | Here, coupled with structural comparisons of the spike proteins, we show that BA.2.12.1, BA.4 and BA.5 (BA.4 and BA.5 are hereafter referred collectively to as BA.4/BA.5) exhibit similar ... b, Epitope of representative antibodies in group E3 (S2H97, PDB: 7M7W) and F1 (S304, PDB: 7JW0). Residues highlighted in red indicate mutated sites in Omicron variants. |
| 4 | 3sbx | - | https://www.sciencedirect.com/science/article/pii/S1097276519302606 | (p) ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch | 2019 | YE Zhang, RL Brentsen, T Fuhrer, U Sauer, K Gerdes- Molecular cell, 2019 - Elsevier | marinum showing similarity to the PpnN core domain and determined in the presence of adenosine monophosphate (AMP) ( PDB : 3SBX , Figure S3 Vibrio cholerae and Idomarina baltica, at a similar position to the phosphate of AMP in the M. marinum structure , suggesting that |
| 5 | 3qh4 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5070724/ | Identification of amino acids related to catalytic function of Sulfolobus solfataricus P1 carboxylesterase by site-directed mutagenesis and molecular modeling | 2016 | YH Choi, YN Lee, YJ Park, SJ Yoon, HB Lee - BMB reports, 2016 - ncbi.nlm.nih.gov | ... the basis of the Protein Data Bank (PDB) databases reported previously: AfuEst (PDB code: 1jji ...esterase (1qz3), MetEst (2c7b), StoEst (3aik), Mycobacterium marinum esterase (3qh4), PcaEst(3zwq ... was created by homology modeling as the superimposed ribbon structure onto it ... |
| 6 | 5unb | - | https://www.sciencedirect.com/science/article/pii/S0091674919316021/pdf?md5=51ff... | Janus kinase inhibition for autoinflammation in patients with DNASE2 deficiency | 2020 | Y Hong, M Capitani, C Murphy, S Pandey- Journal of Allergy and, 2020 - Elsevier | Structural modelling Structural models and figures were prepared using the ICM software package (Molsoft). A homology model for human DNase II was prepared using the existing structure from Burkholderia thailandensis ( PDB 5unb ) as the model template |
| 7 | 5udf | - | https://www.sciencedirect.com/science/article/pii/S0959440X17301586 | Translocation of lipoproteins to the surface of gram negative bacteria | 2018 | Y Hooda, TF Moraes- Current opinion in structural biology, 2018 - Elsevier | The model of LolCDE was obtained from the structure of LptBFG ( PDB ID: 5UDF )and is The structure of type IVa pilus machinery from Myxococcus xanthus ( PDB ID: 3JC9) was used as In contrast, Slam possesses a unique domain architecture and no structure of any protein of |
| 8 | 3rmi | 4q04, 4gt1, 4kzp | http://edepot.wur.nl/466662 | Prediction of Homodimeric Residue-residue Contacts Through Co-evolutionary and Sequence-based Analysis | 2018 | Y Hsieh - 2018 - edepot.wur.nl | 1000 residue range, and a quick pass of the identifiers through RCSB PDB's web-based However, we do not perform any sort of structural alignment to filter out structurally similar the case that this choice biases our dataset towards a certain type of structure , therefore impacting |
| 9 | 2n3s | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.3042/full | Solution structure of protein synthesis initiation factor 1 from Pseudomonas aeruginosa | 2016 | Y Hu, A Bernal, JM Bullard, Y Zhang - Protein Science, 2016 - Wiley Online Library | ... from: E. coli (PDB 1AH9), M. tuberculosis (PDB 3I4O), S. pneumoniae (PDB 4QL5), B.thailandensis (PDB 2N3S), T. thermophilus (PDB 1HR0). Secondary structural elements,highlighted in gray, were derived from the PDB structures. The secondary structure elements ... |
| 10 | 4fkx | - | https://www.sciencedirect.com/science/article/pii/S0006291X1930155X | Characterization of crystal structure and key residues of Aspergillus fumigatus nucleoside diphosphate kinase | 2019 | Y Hu, X Jia, Z Lu, L Han- Biochemical and biophysical research, 2019 - Elsevier | was determined by molecular replacement (MR) method using Trypanosoma brucei NDK (TbNDK, PDB code 4FKX ) as starting The PDB accession code was 6AGY 1230-1247. Google Scholar. [9] L. Moynie, MF Giraud, F. Georgescauld, I. Lascu, A. DautantThe structure of the |