We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9DT8 | 2024 | 0 |
| 9DTC | 2024 | 0 |
| 9DU6 | 2024 | 0 |
| 9DU8 | 2024 | 0 |
| 9DU9 | 2024 | 0 |
| 9DUA | 2024 | 0 |
| 9DUD | 2024 | 0 |
| 9DUF | 2024 | 0 |
| 9DUG | 2024 | 0 |
| 9E0I | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7jw0 | - | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.1c00372 | Dynamic Profiling of Binding and Allosteric Propensities of the SARS-CoV-2 Spike Protein with Different Classes of Antibodies: Mutational and Perturbation-Based | 2021 | G Verkhivker, S Agajanian, D Oztas- Journal of Chemical, 2021 - ACS Publications | The functional adaptability and conformational plasticity of SARS-CoV- 2 spike proteins allow for the efficient modulation of complex phenotypic responses to the host receptor and antibodies. In thi... |
| 2 | 5i0p | - | https://www.sciencedirect.com/science/article/pii/S0021925820000964 | Metallo--lactamase domain-containing protein 2 is S-palmitoylated and exhibits acyl-CoA hydrolase activity | 2021 | MIP Malgapo, JM Safadi, ME Linder- Journal of Biological Chemistry, 2021 - Elsevier | JavaScript is disabled on your browser. Please enable JavaScript to use all the features on this page. Skip to main content Skip to article |
| 3 | 7jxc | 7jxe, 7jxd | https://www.sciencedirect.com/science/article/pii/S0092867421000805 | Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity | 2021 | EC Thomson, LE Rosen, JG Shepherd, R Spreafico- Cell, 2021 - Elsevier | / pdb /surface_glycoprotein/SARS-CoV-2/6m0j/isolde/notes.txt. The 1r42 refined structure differs from the PDB -deposited structure (copied from the 6m17 PDB structure ). ... Key resources table S2H13, S2H14, S2A4, S2X35 IgG Piccoli et al., 2020 PDB: 7JV2, 7JXC, 7JXD, 7JXE |
| 4 | 7k45 | - | https://www.nature.com/articles/S41591-021-01294-w | Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies | 2021 | RE Chen, X Zhang, JB Case, ES Winkler, Y Liu- Nature medicine, 2021 - nature.com | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused the global COVID-19 pandemic. Rapidly spreading SARS-CoV-2 variants may jeopardize newly introduced antibody and vaccine countermeasures. Here, using monoclonal antibodies (mAbs), animal ... Structures of the SARS-CoV-2 RBD in complex with a representative neutralizing antibody from (a) class 1 (S2E12, PDB: 7K45), or (b) class 2 (S309, PDB: 6WPS). |
| 5 | 6nb7 | 6nb6 | https://arxiv.org/abs/2101.01884 | Exploring the Regulatory Function of the N-terminal Domain of SARS-CoV-2 Spike Protein Through Molecular Dynamics Simulation | 2021 | Y Li, T Wang, J Zhang, B Shao, H Gong- arXiv preprint arXiv, 2021 - arxiv.org | taking the S proteins of SARS-CoV with 2 upward RBDs ( PDB ID: 6NB6) (21) and 3 upward RBDs ( PDB ID: 6NB7 ) (21) as We also conducted a time- structure based Independent Components Analysis (tICA) (34, 35) to identify slow motions with high time autocorrelation on |
| 6 | 7jzl | 7jzn | https://www.biorxiv.org/content/10.1101/2021.06.15.448568v1.abstract | Deep Mutational Scanning of Dynamic Interaction Networks in the SARS-CoV-2 Spike Protein Complexes: Allosteric Hotspots Control Functional Mimicry and | 2021 | G Verkhivker- bioRxiv, 2021 - biorxiv.org | pdb id 7KL9 (A), in the complex with the designed miniprotein binder LCB1, pdb id 7JZL (B) complex with the miniprotein LCB3, pdb id 7JZN (C). The structure is in ribbons with protomers A,B,C are colored in green, red and blue respectively |
| 7 | 5udf | - | https://pubs.acs.org/doi/abs/10.1021/acs.chemrev.1c00055 | Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria | 2021 | I Alav, J Kobylka, MS Kuth, KM Pos, M Picard- Chemical, 2021 - ACS Publications | Journal Logo. Structure , Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria. Ilyas Alav Ilyas Alav. Institute of Microbiology and Infection, College of Medical and Dental Sciences |
| 8 | 5udf | - | https://www.nature.com/articles/s41594-021-00573-x | Structural basis for bacterial lipoprotein relocation by the transporter LolCDE | 2021 | X Tang, S Chang, K Zhang, Q Luo, Z Zhang- Nature Structural &, 2021 - nature.com | Advertisement. Advertisement. Nature Structural & Molecular Biology. View all journals; Search; My Account Login. Explore content; Journal information; Publish with us Structural basis for bacterial lipoprotein relocation by the transporter LolCDE |
| 9 | 6x79 | - | https://www.sciencedirect.com/science/article/pii/S0141813021015956 | Chitosan derivatives: A suggestive evaluation for novel inhibitor discovery against wild type and variants of SARS-CoV-2 virus | 2021 | C Modak, A Jha, N Sharma, A Kumar- International Journal of Biological, 2021 - Elsevier | of efficacious treatment strategies to robustly tackle this pandemic by targeting various pathways and mechanisms of infection by either creating new drug molecules or repurpose already existing drug molecules for impacting virus infection cycle or structural proteins [2] ... For heparan sulfate proteoglycan/heparin-binding site as target site, the homotrimerectodomain in prefusion state of S-glycoprotein PDB ID: 6X79 with a low resolution of 2.90 Å was considered |
| 10 | 6nb3 | - | https://advances.sciencemag.org/content/7/1/eabe5575.abstract | Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM | 2021 | C Xu, Y Wang, C Liu, C Zhang, W Han- Science, 2021 - advances.sciencemag.org | For the FP region, we first built the homology model by the Modeller tool within Chimera by using the MERS-CoV S structure (PDB: 6NB3) as template (2, 58, 59) and then used Rosetta to refine this region against the density map |