SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 7jv2 7jvc, 7jw0, 7ra8, 7ral https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1010260 Structural and antigenic variations in the spike protein of emerging SARS-CoV-2 variants 2022 A Mittal, A Khattri, V Verma- PLoS Pathogens, 2022 - journals.plos.org Recent structural and functional studies have mapped the -CoV-2 variants; (2) the structural basis for antibody-mediated fitness, and in conjunction with the structures of the spike-nAb ... the neutralization mechanism involves direct competition with the ACE2 receptor. These antibodies include C002 (PDB: 7K8S) [70], C104 (PDB: 7K8U) [70], S2H13 (PDB: 7JV2) [77], C119 (PDB: 7K8U) [70], C121 (PDB: 7K8X) [70], LY-CoV555 (PDB: 7KMG), DH1041 (7LAA), COVA2-15 (EMD-22061) [82], 2–43 (EMD-22275) [94],
2 7m53 - https://www.nature.com/articles/s42003-022-03262-7 Structural definition of a pan-sarbecovirus neutralizing epitope on the spike S2 subunit 2022 NK Hurlburt, LJ Homad, I Sinha, MF Jennewein- Communications, 2022 - nature.com a Structural alignment of stem helix peptides to CV3-25 Fab and B6 Fab (PDBid: 7M53 ) shown The CV3-25/peptide structure has been deposited in the PDB (7RAQ). The negative stain
3 7n8i - https://www.nature.com/articles/s41592-022-01645-6 Improved AlphaFold modeling with implicit experimental information 2022 TC Terwilliger, BK Poon, PV Afonine, CJ Schlicksup- Nature, 2022 - nature.com To emulate the situation where no similar structure is present in the PDB , templates from the PDB were not used. For each protein we then examined the four AlphaFold models
4 7r7n - https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(22)00311-5/fullt... Monoclonal antibody therapies against SARS-CoV-2 2022 D Focosi, S McConnell, A Casadevall- The Lancet Infectious, 2022 - thelancet.com PDB 7K8M). Antibody binding classes 14 are displayed as mesh space-filling. (C) Structures in complex with a single RBD domain ( PDB 6XEY). Antibody binding classes RBS-A, RBS- ... S2D10633 7r7n RBM class III*
5 6n41 - https://bibliotecadigital.exactas.uba.ar/download/tesis/tesis_n7210_SosaHolt.pdf Diseo, desarrollo y caracterizacin bioqumica y funcional de nanoanticuerpos VHH monovalentes dirigidos contra las protenas del virus de influenza tipo A 2022 CSS Holt - bibliotecadigital.exactas.uba.ar El virus de la Influenza tipo A contina siendo responsable de brotes y epidemias, adems de pandemias con graves consecuencias para la salud humana. Los virus tipo H1N1 y ... En ambos casos el templado con mayor posición en ranking fue el PDB 6N41(A/Netherlands/002P1/1951 (H1N1)) dado su alta identidad de secuencia
6 7lxy - https://www.nature.com/articles/s41467-022-32262-8 SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization 2022 D Mannar, JW Saville, Z Sun, X Zhu, MM Marti- Nature, 2022 - nature.com structure , ACE2 affinity, and evasion of antibodies afforded by previously emerged variant spikes, providing a general structural coordinates ( PDB code 7MJG, 7MJM, 7MJN, 7LXY , 7K43
7 7k45 - https://www.science.org/doi/abs/10.1126/science.abm5835 SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies 2022 SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45),
8 5vxt - https://www.sciencedirect.com/science/article/pii/S0304389422001923 Construction of Biomimetic Nanozyme With High Laccase-and Catecholase-like Activity for Oxidation and Detection of Phenolic Compounds 2022 J Wang, R Huang, W Qi, R Su, Z He- Journal of Hazardous Materials, 2022 - Elsevier Herein, inspired by the similar structure of active site in laccase and catecholase, a novel We expect this finding is beneficial to better understanding the structure -activity relationship ... Scheme 1. Schematic illustration of the synthesis of the I-Cu nanozyme with laccase- and catecholase-like activity by mimicking their catalytic center. (PDB code is 1KYA and 5VXT).
9 6vxx - https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1852117 Virtual screening of phytoconstituents from miracle herb nigella sativa targeting nucleocapsid protein and papain-like protease of SARS-CoV-2 for COVID-19 2022 S Siddiqui, S Upadhyay, R Ahmad- Structure and, 2022 - Taylor & Francis spike glycoprotein (closed state, PDB ID: 6VXX ), spike glycoprotein (open state, PDB ID: structures were subjected to refinements and energy minimizations. Whole pdb structures of
10 7ly3 7ral https://www.cell.com/cell-reports/pdf/S2211-1247(22)00798-7.pdf Cryo-EM structures of SARS-CoV-2 Omicron BA. 2 spike 2022 V Stalls, J Lindenberger, SMC Gobeil, R Henderson- Cell Reports, 2022 - cell.com The structures used in this analysis included PDB IDs 7KE8 (G6141), 7KE6 (G6142), 7KE7 (G6143), 7KE4 (G6144), 7LWS (Alpha), 7LYL (Beta), 8CSA (TM), 7LWL (Mk1), 7LWI (Mk2),