We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7n8i | - | https://www.nature.com/articles/s41592-022-01645-6 | Improved AlphaFold modeling with implicit experimental information | 2022 | TC Terwilliger, BK Poon, PV Afonine, CJ Schlicksup- Nature, 2022 - nature.com | To emulate the situation where no similar structure is present in the PDB , templates from the PDB were not used. For each protein we then examined the four AlphaFold models |
| 2 | 7lxy | - | https://www.nature.com/articles/s41467-022-32262-8 | SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization | 2022 | D Mannar, JW Saville, Z Sun, X Zhu, MM Marti- Nature, 2022 - nature.com | structure , ACE2 affinity, and evasion of antibodies afforded by previously emerged variant spikes, providing a general structural coordinates ( PDB code 7MJG, 7MJM, 7MJN, 7LXY , 7K43 |
| 3 | 7r7n | - | https://www.nature.com/articles/s41467-022-28882-9 | Cryo-EM structure of a SARS-CoV-2 omicron spike protein ectodomain | 2022 | G Ye, B Liu, F Li- Nature communications, 2022 - nature.com | The atomic models generated in this study have been deposited into the PDB with accession number 7TGW (omicron open spike), 7TGX (prototypic open spike), and 7TGY (prototypic ... Forty-nine PDBs of neutralizing antibody/RBD complexes were analyzed using PDBePISA ... 7r7n, 7sn2. Fab: antigen-binding fragment. |
| 4 | 3oj6 | - | https://www.nature.com/articles/s41467-022-33714-x | Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine | 2022 | S Kimura, V Srisuknimit, KL McCarty, PC Dedon- Nature, 2022 - nature.com | as blasticidine-S deaminase ( PDB 3oj6 ) and cytidine deaminase ( PDB 4eg2). The structure of Blasticidine-S deaminase (BSD) is highly similar to the predicted structure of TrcP-NTD |
| 5 | 7jw0 | - | https://www.nature.com/articles/s41586-022-04980-y | BA. 2.12. 1, BA. 4 and BA. 5 escape antibodies elicited by Omicron infection | 2022 | Y Cao, A Yisimayi, F Jian, W Song, T Xiao, L Wang- Nature, 2022 - nature.com | Here, coupled with structural comparisons of the spike proteins, we show that BA.2.12.1, BA.4 and BA.5 (BA.4 and BA.5 are hereafter referred collectively to as BA.4/BA.5) exhibit similar ... b, Epitope of representative antibodies in group E3 (S2H97, PDB: 7M7W) and F1 (S304, PDB: 7JW0). Residues highlighted in red indicate mutated sites in Omicron variants. |
| 6 | 7m53 | - | https://www.nature.com/articles/s42003-022-03262-7 | Structural definition of a pan-sarbecovirus neutralizing epitope on the spike S2 subunit | 2022 | NK Hurlburt, LJ Homad, I Sinha, MF Jennewein- Communications, 2022 - nature.com | a Structural alignment of stem helix peptides to CV3-25 Fab and B6 Fab (PDBid: 7M53 ) shown The CV3-25/peptide structure has been deposited in the PDB (7RAQ). The negative stain |
| 7 | 2lwk | - | https://portal.ichb.pl/wp-content/uploads/2023/02/Doktorat_AleksandraJarmoowicz.... | Small molecules interacting with Influenza virus RNA and SARS-CoV-2 RNA as potential inhibitors of replication | 2022 | A Jarmoowicz - portal.ichb.pl | M121 structural motif of segment 5 (+)RNA secondary structure was investigated by importance of the conserved secondary structure of mentioned structural motif and suggest that it |
| 8 | 3m1x | 3i3f, 3m4s, 3mqw | https://scripts.iucr.org/cgi-bin/paper?ft5116 | Crystal structure of a hypothetical protein from Giardia lamblia | 2022 | DK Beard, S Bristol, K Cosby, A Davis- Section F: Structural, 2022 - scripts.iucr.org | One of these proteins is a putative endonuclease from Entamoeba histolytica ( PDB entries 3mqw, 3m1x and 3m4s; 36% sequence identity and 56% coverage; Seattle Structural |
| 9 | 7ly0 | - | https://www.nature.com/articles/s41564-022-01092-1 | Differential neutralizing antibody responses elicited by CoronaVac and BNT162b2 against SARS-CoV-2 Lambda in Chile | 2022 | ML Acevedo, A Gaete-Argel, L Alonso-Palomares- Nature, 2022 - nature.com | determined crystal structures ( PDB : 7BNN, PDB : 7BWJ, PDB : 7LY0 ). Structural alignments c) Same as a) for antibody S2M28 solved by CryoEM (PDBid: 7LY0 ), which recognizes the |
| 10 | 6n41 | - | https://bibliotecadigital.exactas.uba.ar/download/tesis/tesis_n7210_SosaHolt.pdf | Diseo, desarrollo y caracterizacin bioqumica y funcional de nanoanticuerpos VHH monovalentes dirigidos contra las protenas del virus de influenza tipo A | 2022 | CSS Holt - bibliotecadigital.exactas.uba.ar | El virus de la Influenza tipo A contina siendo responsable de brotes y epidemias, adems de pandemias con graves consecuencias para la salud humana. Los virus tipo H1N1 y ... En ambos casos el templado con mayor posición en ranking fue el PDB 6N41(A/Netherlands/002P1/1951 (H1N1)) dado su alta identidad de secuencia |