We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6TYS | 2020 | 20 |
| 6WS6 | 2020 | 19 |
| 3SDO | 2011 | 19 |
| 3IML | 2009 | 18 |
| 3EOO | 2008 | 17 |
| 4IX8 | 2014 | 17 |
| 3IJP | 2009 | 17 |
| 3SWO | 2011 | 16 |
| 3TCQ | 2012 | 16 |
| 3P0X | 2010 | 15 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3dmo | - | http://www.sciencedirect.com/science/article/pii/S1047847709003463 | Structural and functional analyses of< i> Mycobacterium tuberculosis Rv3315c</i>-encoded metal-dependent homotetrameric cytidine deaminase | 2010 | ZA S?nchez-Quitian, CZ Schneider, RG Ducati? - Journal of structural Biology, 2010 - Elsevier | ... in the PDB (3IJF). Fig. 7A and B show two views of the canonical homotetrameric structure observed for CDAs from S. cerevisiae (1R5T), B. subtilis (1UX1, 1UWZ, 1UX0, 1JTK), Mus musculus (1ZAB, 2FR5, 2FR6), Bacillus anthracis (2D30), Burkholderia pseudomallei (3DMO), ... |
| 2 | 3fdz | - | http://www.google.com/patents?hl=en&lr=&vid=USPATAPP12753638&id=WYjZAAAAEBAJ&oi=... | SYSTEM AND USES FOR GENERATING DATABASES OF PROTEIN SECONDARY STRUCTURES INVOLVED IN INTER-CHAIN PROTEIN INTERACTIONS | 2010 | AL Jochim, PS Arora - US Patent App. 12/753,638, 2010 - Google Patents | ... 4, 2010 Sheet 5 of 7 US 2010/0281003 Al EXTRACT PROTEIN STRUCTURES WITH GREATER THAN TWO ENTITIES FROM PDB PROTEIN DATA BANK ASSIGN SECONDARY STRUCTURE ACCORDING TO (() AND vj/ANGLES OF PROTEIN BACKBONE CALCULATE ... |
| 3 | 3d5t | 3doc | http://www.sciencedirect.com/science/article/pii/S0301462210002437 | 'Cold spots' in protein cold adaptation: Insights from normalized atomic displacement parameters (< i> B'</i>-factors) | 2010 | A Siglioccolo, R Gerace, S Pascarella - Biophysical chemistry, 2010 - Elsevier | ... Growth temperature of the microorganism sources of the selected proteins were taken from thedatabank DSMZ (http://www.dsmz.de/, Deutsche Sammlung von ... Family, Source a, Growth T (?C) b, Pdb ID c, Res. ... Burkholderia pseudomallei, 40, 3D5T, 2.51, 253/328 (77%), 2, 331. ... |
| 4 | 3enk | - | http://bmcstructbiol.biomedcentral.com/articles/10.1186/1472-6807-10-1 | Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non- | 2010 | B Manavalan, SK Murugapiran - BMC structural , 2010 - bmcstructbiol.biomedcentral.com | ... The structure of the VR (PDB code 2p4h; 310 residues) and a dTDP-glucose 4,6-dehydratase(PDB code 1r6d; 322 residues) showed ... In addition, we used 2p4h as the baseline point andsuperimposed it onto the PDB structures listed in Table 1. The root-mean-square ... 3enk. ... |
| 5 | 3kre | - | http://scripts.iucr.org/cgi-bin/paper?fw5260 | Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of SAICAR synthase from Streptococcus suis serotype 2 | 2010 | X Cheng, G Lu, J Qi, H Cheng, F Gao? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2010 - scripts.iucr.org | ... F62, 335-339.] ), Ehrlichia chaffeensis (PDB code 3kre ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Pyrococcus horikoshii OT3 (Manjunath et al., 2010 [Manjunath, K., Jeyakanthan, J., Nakagawa, N., Shinkai, A., Yoshimura, M., Kuramitsu, S ... |
| 6 | 3cez | - | http://scholar.google.com/https://etd.ohiolink.edu/!etd.send_file?accession=wrig... | Understanding the Molecular Dynamics of YPEL3 and FHIT Gene Expression | 2010 | KD KELLEY - 2010 - etd.ohiolink.edu | ... protein structure may also aid in understanding the molecular events involved in theinduction and maintenance of premature senescence. Identifying structural homologybetween a predicted model of YPEL3 and other known structures may ... |
| 7 | 3d6b | 3ii9, 3i3r, 3kjr | https://www.annualreviews.org/doi/abs/10.1146/annurev.biophys.050708.133630 | Protein crystallization using microfluidic technologies based on valves, droplets, and SlipChip | 2010 | L Li, RF Ismagilov- Annual review of biophysics, 2010 - annualreviews.org | was compared with current state-of-the-art technologies at the Seattle Structural Genomics Center crystal structures were solved at higher resolutions higher than those for structures solved at at 1.73 (PDBid:3II9) compared to 2.2 at SSGCID (PDBid: 3D6B ), and dihydrofolate |
| 8 | 3q8n | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | MODELING AND DOCKING STUDIES OF 4-AMINOBUTYRATE AMINOTRANSFERASE FOR HUNTINGTON'S DISEASE. | 2011 | H Pareek, P Thakur, D Ray - International Journal of Pharma & Bio Sciences, 2011 - search.ebscohost.com | ... desired protein ie GABA-AT using a template sequence with PDB code 3Q8N. The constructed 3D models were checked for DOPE score and Ramachandran plot respectively with Modeller 9v8 and PROCHECK. Results are shown in Table 1. Model No. ... |
| 9 | 3enk | - | http://www.sciencedirect.com/science/article/pii/S0003269710007165 | Highly selective l-threonine 3-dehydrogenase from< i> Cupriavidus necator</i> and its use in determination of l-threonine | 2011 | T Ueatrongchit, Y Asano - Analytical Biochemistry, 2011 - Elsevier | ... BaGluE, UDP-glucose 4-epimerase from Bacillus anthracis (2C20); BpGluE, UDP-glucose 4-epimerase from Burkholderia pseudomallei (3ENK); SvDHT, DTDP-glucose 4,6-dehydratase from Streptomyces venezuelae (1R66); ... |
| 10 | 3oec | - | http://www.jbc.org/content/286/42/37011.short | Biochemical Studies and Ligand-bound Structures of Biphenyl Dehydrogenase from Pandoraea pnomenusa Strain B-356 Reveal a Basis for Broad Specificity of the Enzyme | 2011 | S Dhindwal, DN Patil, M Mohammadi? - Journal of Biological Chemistry, 2011 - ASBMB | ... PDB code 1BDB and BphB B-356 are shown in black color, and other structures are shown in light colors. These PDB codes are: 2HQ1, 3OEC, 3PKO, 2UVD, 2PNF, 2WSB, 1YDE, 2WDZ, 1HDC, and 1NFR. Reactivity of BphB B-356 with Polychlorinated Biphenyls. ... |