We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4G5D | 2012 | 16 |
| 3TCQ | 2012 | 16 |
| 3SWO | 2011 | 16 |
| 7LY2 | 2021 | 15 |
| 5DVW | 2015 | 15 |
| 3RD5 | 2011 | 15 |
| 3MEQ | 2010 | 15 |
| 3P0X | 2010 | 15 |
| 6NB8 | 2019 | 15 |
| 3GWC | 2009 | 14 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4p8r | 4lsm | https://www.sciencedirect.com/science/article/pii/S1570963918300220 | Structural studies of glyceraldehyde-3-phosphate dehydrogenase from Naegleria gruberi, the first one from phylum Percolozoa | 2018 | ATP Machado, M Silva, J Iulek- et Biophysica Acta (BBA)-Proteins and, 2018 - Elsevier | cruzi (glicosomal) ( PDB : 4LSM) [12], Trypanosoma brucei (glicosomal) ( PDB : 4P8R ) [13], Leishmania 3PYM), Homarus americanus ( PDB : 1GPD) [46] and Escherichia coli ( PDB : 1GAD) [47 general, they are similar, with some differences in secondary structure elements; RMSD |
| 2 | 5i1f | - | https://www.sciencedirect.com/science/article/pii/S1570963917302959 | Crystal structure of d-glycero--d-manno-heptose-1-phosphate guanylyltransferase from Yersinia pseudotuberculosis | 2017 | H Kim, J Park, S Kim, DH Shin- et Biophysica Acta (BBA)-Proteins and, 2017 - Elsevier | A PSI-BLAST search targeting PDB showed that the sequences of eight crystal structures (4Y7U, 5I1F , 4ECM, 4AAW, 1WVC, 5L6S, 5B04, 2CU2) have strong The homologue structures are detected with the Dali server using a YpHddC structure as a template |
| 3 | 5j49 | - | https://www.sciencedirect.com/science/article/pii/S1570963917302005 | Glucose-1-phosphate uridylyltransferase from Erwinia amylovora: Activity, structure and substrate specificity | 2017 | S Benini, M Toccafondi, M Rejzek, F Musiani- et Biophysica Acta (BBA, 2017 - Elsevier | A summary of data collection and refinement parameters are reported in Table 1. Coordinates and structure factors have been deposited in the PDB with accession code:4D48. A search for structural similarity in the PDB was carried out with PDBeFold [46] Table 4. Glc-1P uridylyltransferase 5J49 B. xenovorans |
| 4 | 6tys | 6u1t | https://www.sciencedirect.com/science/article/pii/S1476927125000143 | Molecular modelling and optimization of a high-affinity nanobody targeting the nipah virus fusion protein through in silico site-directed mutagenesis | 2025 | NMO Odchimar, ANG Dulay, FL Orosco- Computational Biology and, 2025 - Elsevier | Nipah virus (NiV) is a re-emerging zoonotic pathogen with a high mortality rate and no effective treatments, prompting the search for new antiviral strategies. While conventional antiviral ... Protein datasets of experimentally described monoclonal antibody (mAb; PDB ID: 7K14) and fragment antigen-binding antibodies (FAbs; PDB ID: 6T3F, 6U1T, 6TYS, 7UOP, 7UPA, 7UPB, 7UPD, 7UPK, and 7UP9) in complex with NiV pre-fusion protein (NiVF) and NiV pre-fusion apoprotein (PDB ID: 5EVM) were retrieved from the Prot |
| 5 | 4zju | - | https://www.sciencedirect.com/science/article/pii/S1476927123000208 | Computational docking investigation of phytocompounds from bergamot essential oil against Serratia marcescens protease and FabI: Alternative pharmacological | 2023 | KB Lokhande, A Tiwari, S Gaikwad, S Kore- Biology and Chemistry, 2023 - Elsevier | Also, the binding cavity information of the FabI model was taken from the template structure PDB ID: 4ZJU complexes with NAD crystal ligand and the binding cavity of the FabI model |
| 6 | 3qxz | 3oc7, 4qtp, 3swx, 3qk8, 3qre | https://www.sciencedirect.com/science/article/pii/S1476927117300105 | Similarity/dissimilarity analysis of protein structures based on Markov random fields | 2018 | J Wu, T Zhou, J Tao, Y Hai, F Ye, X Liu, Q Dai- Computational biology and, 2018 - Elsevier | Recently, the growth of the Protein Data Bank ( PDB ) (Berman et al., 2000) has been accelerated by a large scale As a result, fast and efficient algorithms for protein structure comparison have become more important to take advantage of the huge amount of structural data |
| 7 | 6nb7 | 6nb8, 6wps, 6wpt, 6ws6 | https://www.sciencedirect.com/science/article/pii/S1471490620302118 | Structural basis of SARS-CoV-2 and SARS-CoVantibody interactions | 2020 | E Gavor, YK Choong, SY Er, H Sivaraman- Trends in, 2020 - Elsevier | While the binding of COV21 to the S-glycoprotein resembles the binding of the SARS-CoV S230( PDB : 6NB7 )[73], the binding interface SARS-CoV-2-S-S309-Fab[12] complex ( PDB : 6WPS/6WPT/6WS6) and the crystal structure of SARS |
| 8 | 5if3 | - | https://www.sciencedirect.com/science/article/pii/S1369703X18301530 | Semi-rational engineering of carbonyl reductase YueD for efficient biosynthesis of halogenated alcohols with in situ cofactor regeneration | 2018 | M Naeem, AU Rehman, B Shen, L Ye, H Yu- Biochemical Engineering, 2018 - Elsevier | Modeller 9.12 package on the basis of the crystal structure of a short-chain dehydrogenase/ reductase SDR ( PDB ID: 5if3 ) from Burkholderia amino acid residues for site directed mutagenesis, docking of the model substrate 3-bromoacetophenone into the structure of YueD |
| 9 | 4q6u | - | https://www.sciencedirect.com/science/article/pii/S1369527421000102 | PAS domains in bacterial signal transduction | 2021 | EC Stuffle, MS Johnson, KJ Watts- Current Opinion in Microbiology, 2021 - Elsevier | ad) PAS monomer structures : (a) The PAS structural prototype photoactive dimer bound to heme cofactor (Fe 3+ , PDB : 4HI4, [25]) and a liganded monomer with cyanomet heme (Fe 3+ -CN, PDB : 3VOL, [31 For clarity, b-type heme is only shown bound to the liganded structure |
| 10 | 4twr | - | https://www.sciencedirect.com/science/article/pii/S1367593120301289 | Molecular evolution and functional divergence of UDP-hexose 4-epimerases | 2020 | S Fushinobu- Current Opinion in Chemical Biology, 2020 - Elsevier | Figure 3. Structural basis for the substrate specificity of group 1b and group 2b enzymes The rotated conformation structure was obtained using the S124A/Y149F double mutant ... Substrate-free structures of GalEs from Bacillus anthracis (BAS5114, PDB: 2C20) and Brucella abortus (PDB: 4TWR) are also available in the database |