We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3GWC | 2009 | 14 |
| 4GIE | 2012 | 14 |
| 4ODJ | 2014 | 14 |
| 3R20 | 2011 | 14 |
| 3DMO | 2008 | 14 |
| 4DLP | 2012 | 14 |
| 4G5D | 2012 | 14 |
| 3DAH | 2008 | 13 |
| 3CEZ | 2008 | 13 |
| 4WI1 | 2016 | 13 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3o0m | 3r6f, 3oj7, 3lb5 | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354057/ | Crystal Structure of Histidine Triad Nucleotide-Binding Protein from the Pathogenic Fungus Candida albicans | 2019 | A Jung, JS Yun, S Kim, SR Kim, M Shin- Molecules and, 2019 - ncbi.nlm.nih.gov | 3. The most similar structure was HINT from the protozoal species Leishmania major (LmHINT); the Z-score was 18.8, and the rmsd Species b, C-terminal region, Z-score, RMSD (), Identity (%), C, PDB code, NCBI ID M. smegmatis, II, 14.9, 3.6, 29, 110, 3O0M , WP_011730267.1 |
| 2 | 3gwc | - | http://www.ingentaconnect.com/content/ben/cchts/2016/00000019/00000001/art00004 | An In Silico Approach for Identification of Potential Anti-Mycobacterial Targets of Vasicine and Related Chemical Compounds | 2016 | A Kashyap Chaliha, D Gogoi, P Chetia - chemistry & high , 2016 - ingentaconnect.com | ... (Table 5). Chemical similarity search of vasicine using PubChem Structure Search yielded ... SlNo. PDB ID Protein Name Protein Name (Short) Gene Name Resolution (A ... 9 3FV5 E. coliTopoisomerase IV Topo IV b3030 1.80 10 3GWC Thymidylate synthase X ThyX Rv2754c 1.90 ... |
| 3 | 3o0h | - | https://link.springer.com/article/10.1007/s00299-021-02717-1 | Exploration of glutathione reductase for abiotic stress response in bread wheat (Triticum aestivum L.) | 2021 | A Kaur, S Tyagi, K Singh, SK Upadhyay- Plant Cell Reports, 2021 - Springer | point in view we studied the secondary and tertiary structure of two TaGR proteins (TaGR1-D -A showed the best PDB hit with the GR of Bartonella henselae ( 3O0H ). The predicted C- |
| 4 | 3tcq | - | https://www.biorxiv.org/content/10.1101/2020.05.27.108969v1.abstract | Common substructures and sequence characteristics of sandwich-like proteins from 42 different folds | 2020 | A Kister- BioRxiv, 2020 - biorxiv.org | structural classification in PDBSum database30 does not support sandwich-like architecture was examined. For secondary structure analysis, the information about localization of strands in sequences was taken from PDB .31 For supersecondary structure (SSS) of the domains |
| 5 | 4ege | - | http://scripts.iucr.org/cgi-bin/paper?no5060 | Crystallization and preliminary X-ray diffraction analysis of Xaa-Pro dipeptidase from Xanthomonas campestris | 2014 | A Kumar, VN Are, B Ghosh, U Agrawal - Section F: Structural , 2014 - scripts.iucr.org | ... Although the structures of XPD43 orthologues from the eubacteria Mycobacterium ulcerans, Bacillus anthracis and Thermotoga maritima (PDB entries 4ege , 3q6d and 2zsg ) have been deposited in the PDB by structural genomics consortia, none of these enzymes have been ... |
| 6 | 4kam | - | https://mostwiedzy.pl/pl/publication/enzymes-of-the-l-methionine-biosynthesis-pa... | Enzymes of the L-methionine biosynthesis pathway in Candida albicans as potential novel targets for antifungal chemotherapy | 2024 | A Kupliska - 2024 - mostwiedzy.pl | Analysis of the crystal structure of the bacterial Met15p from Wolinella succinogenes, revealed Reports concerning the oligomeric structure of the Str2p enzyme provide evidence for a |
| 7 | 4kam | - | https://www.nature.com/articles/s41598-024-79886-y | Targeting Candida albicans O-acetyl-L-homoserine sulfhydrylase (Met15p) in antifungal treatment | 2024 | A Kupliska, K Rzd, J Stefaniak-Skorupa- Scientific Reports, 2024 - nature.com | Several O-acetyl-L-homoserine or L-homocysteine structural analogs were analyzed as potential inhibitors of CaMet15p. In these studies, a newly developed RP-HPLC-MS method ... The quaternary structure of CaMet15p is therefore consistent with those of its S. cerevisiae29 (PDB code: 8OVH), Wolinella succinogenes13 (PDB code: 3RI6), and Mycobacterium marinum30 (PDB code: 4KAM) counterparts. |
| 8 | 3ftp | - | http://onlinelibrary.wiley.com/doi/10.1002/bit.24956/abstract | Crystallographic analysis and structure-guided engineering of NADPH-dependent Ralstonia sp. alcohol dehydrogenase toward NADH cosubstrate specificity | 2013 | A Lerchner, A Jarasch, W Meining? - Biotechnology and Bioengineering, 2013 - Wiley Online Library | ... The coding sequence for RasADH (starting with Tyr2 according to the UniProt data bank accession number C0IR58) was amplified from the plasmid pEam-RasADH (Lavandera et al. ... 8 homologous ?-ketoacyl-acyl carrier protein reductase of Streptomyces coelicolor (PDB code: ... |
| 9 | 5unb | - | https://www.biorxiv.org/content/early/2018/12/01/480194.abstract | Universal architectural concepts underlying protein folding patterns | 2018 | A Lesk, R Subramanian, L Allison, D Abramson- bioRxiv, 2018 - biorxiv.org | to give proteins their intricate three-dimensional shapes and folding patterns (tertiary structure ) Unravelling protein architecture and discovering the relationship among these three major levels of of protein folding patterns have revealed recurrent themes at all structural levels (2 |
| 10 | 4ni5 | - | http://pubs.rsc.org/is/content/articlehtml/2016/cc/c6cc00051g | Structure-guided stereoselectivity inversion of a short-chain dehydrogenase/reductase towards halogenated acetophenones | 2016 | A Li, L Ye, X Yang, C Yang, J Gu, H Yu - Chemical Communications, 2016 - pubs.rsc.org | ... As a powerful method to decipher a possible molecular basis for enzyme properties, structuralcomparison involving the detailed structure alignment has ... using SDRs from Drosophilamelanogaster (31% identity, PDB: 1SNY A) and Brucella suis (48% identity, PDB: 4NI5 A) as ... |