We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3FVB | 2009 | 13 |
| 3G87 | 2009 | 1 |
| 3GAF | 2009 | 10 |
| 3GBZ | 2009 | 5 |
| 3GC0 | 2009 | 4 |
| 3GE4 | 2009 | 7 |
| 3GK0 | 2009 | 2 |
| 3GK3 | 2009 | 1 |
| 3GKA | 2009 | 11 |
| 3GLQ | 2009 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2n3s | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.3042/full | Solution structure of protein synthesis initiation factor 1 from Pseudomonas aeruginosa | 2016 | Y Hu, A Bernal, JM Bullard, Y Zhang - Protein Science, 2016 - Wiley Online Library | ... from: E. coli (PDB 1AH9), M. tuberculosis (PDB 3I4O), S. pneumoniae (PDB 4QL5), B.thailandensis (PDB 2N3S), T. thermophilus (PDB 1HR0). Secondary structural elements,highlighted in gray, were derived from the PDB structures. The secondary structure elements ... |
| 2 | 2n6g | 2lpd, 2myy | http://www.jbc.org/content/early/2016/09/05/jbc.M116.746297.short | Structures of a nonribosomal peptide synthetase module bound to MbtH-like proteins support a highly dynamic domain architecture | 2016 | BR Miller, EJ Drake, C Shi, CC Aldrich- Journal of Biological, 2016 - ASBMB | The crystal structure of an MLP from Pseudomonas aeruginosa called PA2412 (13), and the from M. tuberculosis (14) and three other organisms [M. marinum (2MYY), M. avium ( 2N6G ), and Burkholderia 2LPD)] that have not been published, all show a flat architecture with three |
| 3 | 2n6t | 2n6x, 2n6w, 2n6s | https://www.biorxiv.org/content/10.1101/554931v1.abstract | Conditional Prediction of RNA Secondary Structure Using NMR Chemical Shifts | 2019 | K Zhang, AT Frank- bioRxiv, 2019 - biorxiv.org | chemical shifts were downloaded from the Protein Data Bank ( PDB : http://www. pdb .org) and native NMR-derived structure and the comparison structure is the CS-Folding generated structure 2JYM 2L5Z 2LK3 2MIS 2QH2 1Z2J 1JO7 5UZT 2N3Q 5IEM 2L3E 2N6T 2LPS 2N6S |
| 4 | 2n6t | 2n6w, 2n6x, 2n6s | https://www.sciencedirect.com/science/article/pii/S0022283617304680 | F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly | 2017 | S Jain, T Schlick- Journal of molecular biology, 2017 - Elsevier | Table 1. List of 50 RNA PDB files whose 3D structures were generated in this paper. PDB , Residues, Molecule, Structure . 2M4W, 17, HEV genome bulge, Hairpin, internal loop 2N6T , 42, CssA mRNA thermometer top, Hairpin, internal loops |
| 5 | 2n6x | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5511288/ | RNA structure refinement using NMR solvent accessibility data | 2017 | C Hartlmller, JC Gnther, AC Wolter, J Whnert - Scientific , 2017 - ncbi.nlm.nih.gov | ... Figure 4b ) and the corresponding sPRE values are underestimated based on the NMR solution structure , independent of which structural model of the UUCG loop motif ( PDB codes 1HLX, 1K2G, 1TLR, 1Z31, 2KHY, 2KOC, 2KZL, 2LHP, 2LUB and 2N6X ) was used. ... |
| 6 | 3cez | - | http://ntnu.diva-portal.org/smash/record.jsf?pid=diva2:603697 | Structure-functional Characterization of Mammalian Redox Proteins: Methionine sulfoxide reductase B1 (MsrB1), Glutaredoxin domain (Grx) of TGR, and Thioredoxin (Trx) | 2013 | O Dobrovolska - 2013 - ntnu.diva-portal.org | ... situated in the second ?-sheet. The four cysteines Cys23, Cys26, Cys71, and Cys74, situated outside the protein active site, coordinate zinc ion, stabilizing the structure of MsrB1. Figure II.1.2. Structure of MsrB1 (pdb code 2kv1) [55]. II.1.1 MsrB1-Thioredoxin interaction ... |
| 7 | 3cez | - | http://www.springerlink.com/index/E032J772125W08T2.pdf | 1 H, 13 C and 15 N resonance assignment of a zinc-binding methionine sulfoxide reductase type-B from the thermophilic archeabacterium Methanothermobacter thermoautotrophicus | 2010 | M Carella, O Ohlenschl?ger, R Ramachandran? - Biomolecular NMR Assignments, 2010 - Springer | ... 2) as predicted from chemical shifts by using TALOS+ (Shen et al. 2009) are in close agreement with the ones present in other known MSRB structures (eg PDB 3HCJ, 3CEZ, 1L1D). The 13Ca and 13Cb chemical shifts suggested (Kornhaber et al. ... |
| 8 | 3cez | 3cxk | http://link.springer.com/chapter/10.1007/978-94-017-8742-0_11 | Evolution of Structural and Coordination Features Within the Methionine Sulfoxide Reductase B Family | 2014 | E Shumilina, O Dobrovolska, A Dikiy - The Structural Basis of Biological , 2014 - Springer | Figure V.2.2. Three-dimensional structure of Zn-binding site and thecorresponding regions of MsrBs family. For the explanation see text. A - MsrB1, M.musculus, 2KV1, [123]; B - MsrB1, H. sapience , 3MAO, not published; C - MsrB2, M.musculus, 2L1U, [125]; D - MsrB, X. campestris, 3HCI, [124]; E -B. pseudomallei,3CEZ/3CXK, not published; http://www.diva-portal.org/smash/get/diva2:603697/FULLTEXT02.pdf |
| 9 | 3cez | 3cxk | http://www.sciencedirect.com/science/article/pii/S002228360901095X | Methionine sulfoxide reductase B displays a high level of flexibility | 2009 | FM Ranaivoson, F Neiers, B Kauffmann? - Journal of molecular Biology, 2009 - Elsevier | ... View thumbnail images View high quality image (983K). Two X-ray structures of MsrB from Neisseria gonorrhoeae [Protein Data Bank (PDB) ID 1L1D 12 ] and Burkhodelia pseudomallei (PDB IDs 3CXK and 3CEZ; unpublished results) have been determined so far. ... |
| 10 | 3cez | 3cxk, 3eoo | http://www.jbc.org/content/285/43/33315.short | Insights into function, catalytic mechanism, and fold evolution of selenoprotein methionine sulfoxide reductase B1 through structural analysis | 2010 | FL Aachmann, LS Sal, HY Kim, SM Marino? - Journal of Biological Chemistry, 2010 - ASBMB | ... Relative to MsrB1, the crystal structures of MsrBs from N. gonorhoeae (PDB code 1L1D) (8), X. campestris (PDB code 3HCI) (36), B. pseudomallei (PDB code 3CEZ/3CXK), S. pneumoniae (PDB code 3E0M) (31), and B. subtilis (3E0O) (31), as well as the solution structure of B ... |