We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3FDZ | 2009 | 13 |
| 3Q8H | 2011 | 13 |
| 4O3V | 2014 | 13 |
| 3CEZ | 2008 | 13 |
| 3L56 | 2010 | 13 |
| 3KRS | 2009 | 13 |
| 3KE1 | 2009 | 13 |
| 7RA8 | 2021 | 13 |
| 3FVB | 2009 | 13 |
| 4ZJU | 2015 | 13 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5ha4 | - | https://kronika.ac/wp-content/uploads/10F.pdf | Computational modelling, molecular docking, and molecular dynamics simulation studies of Enterococcus faecalis diaminopimelate epimerase | 2024 | J Chaudhary, P Sharma, N Singh, VK Srivastava - kronika.ac | .nlm.nih.gov] and converted to PDB format using Pymol software. of EfDapF was opened as PDB format, and polar hydrogen Co-crystal structure of DapF from C.glutamicum ... The available crystal structures of DapF from different organisms such as E.coli [PDB entry: 4IJZ], Bacillus anthracis [PDB entry: 2OTN], Acinetobacter baumannii [PDB entry: 5HA4], |
| 2 | 6d9y | - | https://www.nature.com/articles/s41598-024-65627-8 | Crystal structure of l-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a -furanosyl hemiketal of substrates | 2024 | M Akagashi, S Watanabe, S Kwiatkowski, J Drozak- Scientific Reports, 2024 - nature.com | Although the crystal structure of l-KDRDH was unavailable, the closest related structure in the PDB , the hypothetical SDR protein from Burkholderia phymatum ( 6D9Y ; not yet published) |
| 3 | 6c9e | - | https://www.nature.com/articles/s42003-024-07299-8 | The structural and functional analysis of mycobacteria cysteine desulfurase-loaded encapsulin | 2024 | Y Tang, Y Liu, M Zhang, W Lan, M Ma, C Chen- Communications, 2024 - nature.com | ( PDB 6C9E ) as the initial model. Model building and refinement was performed within Coot 0.8.9.2 and Phenix 1.14, respectively. The final refined models were validated by MolProbity |
| 4 | 6q04 | - | https://www.cell.com/cell/fulltext/S0092-8674(24)00101-6?uuid=uuid%3A25e6b683-fb... | Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries | 2024 | YX Tsai, NE Chang, K Reuter, HT Chang, TJ Yang- Cell, 2024 - cell.com | (A) SAXS molecular envelop and structure of N-cadherin ( PDB : 3Q2W) modeled with (D) SAXS molecular envelop and structure of EC4-EC5 (taken from PDB : 3Q2W) modeled ... MERS-CoV S structure in complex with 5-N-acetyl neuraminic acid Park et al.90 PDB: 6Q04 |
| 5 | 7lxw | 7lxx, 7ly0, 7lxz | https://search.proquest.com/openview/6cfc4e17f038b0e6224164311189dc90/1?pq-origs... | A Biophysical and Structural Assessment of the Spillover Potential of Bat-Borne Sarbecoviruses | 2024 | S Zepeda - 2024 - search.proquest.com | The propensity of coronaviruses to spillover from animal reservoirs into human populations has proven to have a startling impact on society in recent years. During the first two outbreaks |
| 6 | 6bfu | - | https://pmc.ncbi.nlm.nih.gov/articles/PMC11014491/ | Broadly neutralizing antibodies against emerging delta-coronaviruses | 2024 | M Rexhepaj, YJ Park, L Perruzza, D Asarnow- , 2024 - pmc.ncbi.nlm.nih.gov | E, Superimposition of the PD33-bound PDCoV RBD structure with the PDCoV S ectodomain trimer structure ( PDB 6BFU ) 35 showing that PD33 could not bind to a closed S trimer due |
| 7 | 6tz8 | - | https://theses.hal.science/tel-04464042/document | Caractrisation de lectines de champignons opportunistes mergents et identification de nouvelles lectines partir d'extraits fongiques | 2024 | T CREPIN, U KRENGEL, A de Palma, GJ BOONS - theses.hal.science | Cyanovirin-N (CV-N) is a small protein from the cyanobacterium Nostoc ellipsosporum that binds mannosides and possesses strong virucidal properties against a wide range of viruses (... C. neoformans (PDB ID: 6TZ8) and Coccidioides immitis (PDB ID: 5B8I) [148]. In all the fungal complexes, the overall fold of calcineurin was very similar |
| 8 | 7ki4 | 7ki6 | https://link.springer.com/article/10.1007/s11030-024-10932-7 | From antibiotic to antiviral: computational screening reveals a multi-targeting antibiotic from Streptomyces spp. against Nipah virus fusion proteins | 2024 | NMO Odchimar, MAB Macalalad, FL Orosco- Molecular Diversity, 2024 - Springer | , a crystal structure was used ( PDB ID: 5EVM). structure , homology modeling was performed using SWISSMODEL with the following PDB structure files as reference structures : 7KI4 and |
| 9 | 7kds | 7kvy, 7mmz, 8sf3 | https://www.nature.com/articles/s41557-024-01646-2 | Enzymatic synthesis of azide by a promiscuous N-nitrosylase | 2024 | A Del Rio Flores, R Zhai, DW Kastner, K Seshadri- Nature Chemistry, 2024 - nature.com | To shed light on the catalytic mechanism of Tri17, we solved the X-ray crystal structure of Tri17 at a resolution of 2.4 in its apo form and generated structural models with AlphaFold2 ( |
| 10 | 4q1t | - | https://www.pnas.org/doi/abs/10.1073/pnas.2413673121 | Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all... | 2024 | MS Newton, AL Azadeh, AB Morgenthaler- Proceedings of the, 2024 - pnas.org | We show that changes in the structures of the kinase or jejuni ( PDB 2AKO). Conserved or conservatively substituted glutamate and sulfate in PDB 2J5V and ADP in PDB 2AKO. These ...Fig. 4. Replacement of E. coli ProB with ProBs from B. thailandensis and C. jejuni does not impair growth of E. coli on glucose. (A) Surfaces of ProB protomers from E. coli (PDB 2J5V), B. thailandensis (PDB 4Q1T), and C. jejuni (PDB 2AKO) |