SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3gaf - https://www.sciencedirect.com/science/article/abs/pii/S2468823123005060 Design of St-2-2 7α-HSDH mutants for altering substrate preference and thermostability 2023 Y Pan, S Tang, L Zhu, D Lou, J Tan, B Wang- Available at SSRN 4429366 - papers.ssrn.com -helix structure , whereas the 226 C-terminus of EC 7-HSDH and the adjacent loop structure structure analysis stimulated our interest in studying the effect of the C-terminus 229 ... Structural alignments of St-2- 246 2 (slate blue) and crystallized 7α-HSDHs from Escherichia coli (7eny, gray) [41], 247 Clostridium absonum (5epo, salmon red) [22], Brucella Melitensis (3gaf, yellow) [42],
2 5woq - http://ijiset.com/vol5/v5s3/IJISET_V5_I03_01.pdf In-Silico Structural & Molecular Characterization Of Clgr From Mycobacterium Tuberculosis 2018 YN Joshi, RD Salunkhe - ijiset.com was obtained through SWISS MODEL server using resolution 1.8 A structure of ClgR from Mycobacterium smegmatis ( PDB Id: 5woq .2.A K, Bordoli L, Kopp J, Schwede T. The SWISSMODEL Workspace: A web-based environment for protein structure homology modelling
3 3qi6 6cja https://www.nature.com/articles/s41598-020-71756-7 Catalytic specificity of the Lactobacillus plantarum cystathionine -lyase presumed by the crystallographic analysis 2020 Y Matoba, M Noda, T Yoshida, K Oda, Y Ezumi- Scientific Reports, 2020 - nature.com The reverse transsulfuration pathway, which is composed of cystathionine -synthase (CBS) and cystathionine -lyase (CGL), plays a role to synthesize l-cysteine using l-serine and the sulfur atom in l-methionine. A plant-derived lactic acid bacterium Lactobacillus plantarum SN35N
4 3gvh - https://mic.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.000600 Analysis of the Mycoplasma bovis lactate dehydrogenase reveals typical enzymatic activity despite the presence of an atypical catalytic site motif 2018 Y Masukagami, KA Tivendale- , 2018 - mic.microbiologyresearch.org between MBOVPG45_0326 and the other bac- terial LDHs, and 2230 % identity across the region of align- ment between MBOVPG45_0326 and the other bacterial and parasitic MDHs in the PDB protein structure database 3GVH RCSB PDB Brucella melitensis LDH
5 3sdw - http://www.jbc.org/content/early/2015/01/20/jbc.M114.604546.short Metabolic fate of unsaturated glucuronic/iduronic acids from glycosaminoglycans: molecular identification and structure determination of Streptococcal isomerase and … 2015 Y Maruyama, S Oiki, R Takase, B Mikami… - Journal of Biological …, 2015 - ASBMB ... Owing to the high sequence identity, the overall structure of SagDhuI was highly similar to threegroup I-protein structures from S. pneumoniae (PDB code 2PPW), Novosphingobium ... In contrast,group II proteins (PDB codes 1NN4, 3K8C, 3HEE, and 3SDW), which consist of ...
6 4wi1 - http://csmres.co.uk/cs.public.upd/article-downloads/Drug-targeting-of-one-or-mor... Drug targeting of one or more aminoacyl-tRNA synthetase in the malaria parasite Plasmodium 2018 Y Manickam, R Chaturvedi, P Babbar- Drug Discovery, 2018 - csmres.co.uk site of Pf-LRScyto effectively and the crystal structure for the editing domain of enzymes with this scaffold is known different inhibitor molecules: halofuginone (HF, yellow PDB ID: 4YDQ), glyburide (violet, PDB ID: 5IFU), TCMDC-124506 (orange, PDB ID: 4WI1 ) and modeled
7 4kam - https://depositonce.tu-berlin.de/handle/11303/6740 Metabolic engineering of O-acetyl-L-homoserine sulfhydrylase and Met-biosynthetic pathway in Escherichia coli 2017 Y Ma - 2017 - depositonce.tu-berlin.de ... secondary structure and overall stability of investigated proteins. All these reasons highlight ... Figure 2
8 4jv3 4f32 https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.0c00653 Semisynthesis and Biological Evaluation of Platencin Thioether Derivatives: Dual FabF and FabH Inhibitors against MRSA 2021 Y Li, X Weng, Y Deng, J Pan, S Zhu- ACS medicinal, 2021 - ACS Publications The discovery and clinical use of multitarget monotherapeutic antibiotics is regarded as a promising approach to reduce the development of antibiotic resistance. Platencin (PTN), a potent natural a... On the basis of the X-ray structures of PTN with ecFabF(C163Q), Burkholderia vietnamiensis FabF, and Brucella melitensis FabB (PDB IDs 3HO2, 4F32, and 4JV3, respectively) as well as that of platencin A1 with ecFabF-(C163Q) (PDB ID 3HO9), it is likely that these PTN derivatives may also interact with FabF or
9 3iml - http://pubs.rsc.org/doi/c5ra27938k Structure of a thermostable methionine adenosyltransferase from Thermus thermophilus HB27 reveals a novel fold of the flexible loop 2016 Y Liu, W Wang, W Zhang, Y Dong, F Han, M Raza - RSC Advances, 2016 - pubs.rsc.org ... sapiens (HsMAT, PDB code: 2P02), Burkholderia pseudomallei (BpMAT, PDB code: 3IML),Thermococcus kodakarensis ... 20 The structure of EcMAT (PDB code: 1RG9, chain A) was selectedas the ... the underlying reason for its thermostability, we solved the crystal structure of apo ...
10 4lgv - http://pubs.acs.org/doi/abs/10.1021/acscatal.6b03440 Substrate Channeling in an Artificial Metabolon: A Molecular Dynamics Blueprint for an Experimental Peptide Bridge 2017 Y Liu, DP Hickey, JY Guo, E Earl, S Abdellaoui - ACS , 2017 - ACS Publications Figure 3. (A) Illustration of the proposed channeling complex using a poly(lysine) bridge as an electrostatic surface between hexokinase (HK; PDB 3VF6) and glucose-6-phosphate dehydrogenase (G6PDH; PDB 4LGV).