SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 6uk3 5v96, 6aph, 3d64, 3n58, 3glq https://www.mdpi.com/2218-273X/10/12/1682 S-adenosyl-l-homocysteine Hydrolase: A Structural Perspective on the Enzyme with Two Rossmann-Fold Domains 2020 K Brzezinski- Biomolecules, 2020 - mdpi.com major [3G1U, unpublished], Cryptosporidium parvum [5HM8 unpublished], Acanthamoeba castellanii [ 6UK3 , unpublished], Naegleria Crystal structures of SAHases were acquired from PDB cofactor-binding domains was performed based on secondary structure assignments in
2 6u94 - https://www.biorxiv.org/content/10.1101/2021.08.17.456619.abstract Genome sequencing of 196 Treponema pallidum strains from six continents reveals additional variability in vaccine candidate genes and dominance of Nichols clade 2021 NAP Lieberman, MJ Lin, H Xie, L Shretha, T Nguyen- bioRxiv, 2021 - biorxiv.org guided by the top 1-7 templates for each target. We used the following templates in modelling each target: TP0136 used 4a2l and 5oj5; TP0326 used 4k3b and 5d0o; TP0548 used 6h3i; TP0966 used 1yc9, 3d5k, 4k7r, 4mt0, 4mt4, 5azs, and 6u94; TP0967 used 1yc9, 3d5k, 5azp, 5azs, and 6u94.
3 6tz8 - https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011056 Natural product ligands of FKBP12: Immunosuppressive antifungal agents FK506, rapamycin, and beyond 2023 A Rivera, J Heitman- PLoS pathogens, 2023 - journals.plos.org adapted from Harnessing calcineurin-FK506-FKBP12 crystal structures from invasive fungal pathogens to develop antifungal agents ( PDB 6TZ8 ) [3]. The original figure was published
4 6tz8 - https://theses.hal.science/tel-04464042/document Caractrisation de lectines de champignons opportunistes mergents et identification de nouvelles lectines partir d'extraits fongiques 2024 T CREPIN, U KRENGEL, A de Palma, GJ BOONS - theses.hal.science Cyanovirin-N (CV-N) is a small protein from the cyanobacterium Nostoc ellipsosporum that binds mannosides and possesses strong virucidal properties against a wide range of viruses (... C. neoformans (PDB ID: 6TZ8) and Coccidioides immitis (PDB ID: 5B8I) [148]. In all the fungal complexes, the overall fold of calcineurin was very similar
5 6tz8 - https://www.currentscience.ac.in/data/forthcoming/206.pdf Uneditedversion published onlineon 15/7/2021 2021 G Biswas, R Banerjee - currentscience.ac.in exclusively with P2, while P1 mediates molecular recognition and binding, as evident from the crystal structures of (truncated) SurA-peptide complexes46 The crystal structure of CaEss1 showed structural similarity to the human PIN1 protein except for the
6 6tz8 - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7669531/ Current Challenges and Opportunities in Designing ProteinProtein Interaction Targeted Drugs 2020 WH Shin, K Kumazawa, K Imai- and Applications in, 2020 - ncbi.nlm.nih.gov Phase Reached*, Modality*, Drug PDB ID**, Drug-Protein PDB ID*, Target PPI PDB ID binding protein 1A inhibitor, Inhibitor, Approved (1994), Small molecule, FK5, 1BKF, 6TZ8 (FKBP12/CNA 2.8 resolution by cryo-electron microscopy (cryo-EM).65 The cryo-EM structure revealed ... 6TZ8 (FKBP12/CNA/CNB) (C. neoformans)
7 6tys 7ki6, 7ki4 https://www.nature.com/articles/s41467-023-39278-8 Structure and antigenicity of divergent Henipavirus fusion glycoproteins 2023 A Isaacs, YS Low, KL Macauslane, J Seitanidou- Nature, 2023 - nature.com -EM structures from this work also display clear fusion peptide loop densities, which were only previously seen in structures determined by X-ray crystallography for NiV F ( PDB 5EVM &
8 6tys - https://www.biorxiv.org/content/10.1101/2021.07.09.451785.abstract Study of Basic Local Alignment Search Tool (BLAST) and Multiple Sequence Alignment (Clustal-X) of Monoclonal mice/human antibodies 2021 IV Ferrari, P Patrizio- bioRxiv, 2021 - biorxiv.org zone between 150-210 residues amino acids; with the exception of ID PDB 3I9G-3W9D 6TYS : (A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Antibodies all have the same basic structure consisting of two heavy and two light
9 6tys - https://repositorio.ufopa.edu.br/jspui/handle/123456789/332 Planejamento de protenas imunognicas multi-eptopo visando o desenvolvimento de uma vacina de nova gerao para a infeco do vrus Nipah 2020 JMP GALCIO - 2020 - repositorio.ufopa.edu.br -defensin adjuvants were also added to the structural models to increase immunogenicity The interactions between each predicted epitope and MHC-I and MHC- II structures were also analyzed, using molecular modeling P Fosfoprotena PDB Protein Data Bank
10 6tys - https://www.mdpi.com/1999-4915/12/3/342 Structural insight into paramyxovirus and pneumovirus entry inhibition 2020 M Aggarwal, RK Plemper- Viruses, 2020 - mdpi.com 19,20,21] have furthermore created a novel opportunity for structure -informed mechanistic Structural information is very limited compared to that available for the paramyxovirus attachment Consequently, crystal structures of prefusion PIV5 and NiV F ectodomains could only be