We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6Q05 | 2020 | 21 |
| 7LY3 | 2021 | 21 |
| 7LXY | 2021 | 21 |
| 3LAA | 2010 | 21 |
| 7JZM | 2020 | 21 |
| 7N8H | 2021 | 20 |
| 3UAM | 2011 | 20 |
| 3V7O | 2012 | 20 |
| 3P96 | 2010 | 19 |
| 6WS6 | 2020 | 18 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4yk1 | 4yk2, 4yk3 | https://www.frontiersin.org/articles/10.3389/fmicb.2019.00921/abstract | Versatility of the BID domain: Conserved function as type-IV-secretion-signal and secondarily evolved effector functions within Bartonella-infected host cells | 2019 | A Wagner, C Tittes, C Dehio- Frontiers in microbiology, 2019 - frontiersin.org | BID fold is highlighted through superposition of the three solved BID domains: BroBep6_tBID1 (green; PDB : 4YK1 ), BclBep9_tBID1 (cyan; PDB : 4YK2), and BheBepE_BID1 (purple; PDB : 4YK3 into ancestral tBIDs found in the canonical FIC-OB-BID architecture and derived |
| 2 | 3gp5 | 4dz6, 3gw8 | http://www.sciencedirect.com/science/article/pii/S0010854515001125 | Vanadium and proteins: Uptake, transport, structure, activity and function | 2015 | JC Pessoa, E Garribba, MFA Santos… - Coordination Chemistry …, 2015 - Elsevier | ...A more recent 2.2 Å structure of a transition state nucleoside diphosphate kinase from Borrelia burgdorferi bound to vanadate(V) and ADP was deposited (PDB: 4DZ6) ... Later the structure of the bacterial dPGM from Burkholderia pseudomallia was also solved complexed with vanadate(V) (PDB: 3GW8 and 3GP5) [319]; in the 3GW8 structure at 1.9 Å resolution, glycerol, from the crystallization conditions, reacted with vanadate(V) forming a species quite similar to the enzymatic substrate. ... |
| 3 | 3gp5 | - | http://www.sciencedirect.com/science/article/pii/S0020169314001042 | Vanadate in structural biology | 2014 | S Akabayov, B Akabayov - Inorganica Chimica Acta, 2014 - Elsevier | ... Protein data bank; Data mining; Protein-vanadate complex. ... Structures of biological macromolecules containing ligands with vanadium were downloaded from the Protein Databank (www.pdb.org ... PDB, ProteinOrganism, CLASS a, Geometry b, DNA/RNA c, Metal Ion d, TS e, Ligand ... |
| 4 | 4xfd | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1552199 | Validation of NAD synthase inhibitors for inhibiting the cell viability of Leishmania donovani: In silico and in vitro approach | 2019 | H Mandal, S Vijayakumar, S Yadav- Structure and, 2019 - Taylor & Francis | Skip to Main Content |
| 5 | 3eiy | - | https://academic.oup.com/bib/article-abstract/22/6/bbab159/6278145 | Utilizing graph machine learning within drug discovery and development | 2021 | T Gaudelet, B Day, AR Jamasb, J Soman- Briefings in, 2021 - academic.oup.com | structural relationships between their amino acid residues [19, 20] and small molecule drugs as graphs relating their constituent atoms and chemical bonding structure [ data structures . Figure 7. Illustration of (A) a protein (PDB accession: 3EIY) and (B) its graph representation derived based on intramolecular distance with cut-off threshold set at 10Å. |
| 6 | 2klx | - | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.9b00101 | Utility of Covalent Labeling Mass Spectrometry Data in Protein Structure Prediction with Rosetta | 2019 | ML Aprahamian, S Lindert- Journal of Chemical Theory and, 2019 - ACS Publications | like the following: Which amino acid types provide the most useful structural information structures that served as a nonredundant representation of single chain monomers in the PDB the protein set, distributions of the total number of residues, secondary structure content... The six proteins selected from the ab initio set were PDB ID 1tpm, 2klx, 2nc2, 2y4q, 3iql, and... |
| 7 | 3eiy | - | https://arxiv.org/abs/2012.05716 | Utilising Graph Machine Learning within Drug Discovery and Development | 2020 | T Gaudelet, B Day, AR Jamasb, J Soman- arXiv preprint arXiv, 2020 - arxiv.org | and evolve along a temporal dimension resulting in changes to composition, structure and attributes One such approach is to use a graph's structural information to regularise embeddings authors suggest the atten- tion mechanism is decoupled from the architecture and should |
| 8 | 2lwk | - | https://deepblue.lib.umich.edu/handle/2027.42/155127 | Using Machine Learning to Better Predict the Structure of RNA and RNA Containing Complexes | 2020 | S Chhabra - 2020 - deepblue.lib.umich.edu | 53 3.5 Top 10 RNA Structures for 2LWK predicted from sequence using CS-Fold and Rosetta structures . The statistics from Protein Data Bank ( PDB ) (http://www.rcsb.org) current understanding of the RNA structure -function relationships is limited due to |
| 9 | 3d6b | 3ii9 | http://pubs.acs.org/doi/abs/10.1021/ja908555n | User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments | 2009 | L Li, W Du, R Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications | ... These crystals yielded a structure of 2.2 ? resolution and space group P2 1 2 1 2 1 (PDBid3D6B). Without ... manuscript. We thank Bart Staker for checking the structure of glutaryl-CoA dehydrogenase for PDB deposition. Supporting Information ... |
| 10 | 6nb8 | - | https://www.preprints.org/manuscript/202005.0270 | Use of Isoelectric Point for Fast Identification of Anti-SARS CoV-2 Coronavirus Proteins | 2020 | K Mallik - 2020 - preprints.org | If we follow the radial structure of the SARS CoV-2 virion, a gradual fall the in the pI values is 6NB8 (+) Human S230 antigen-binding fragment light chain 6.046 to make anti-viral drugs for SARS CoV-2. From the pI consideration, application of human Interferon- ( PDB ID 1AU1 |