We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6V91 | 2020 | 0 |
| 6VH5 | 2020 | 0 |
| 6DEG | 2018 | 0 |
| 6VS4 | 2020 | 0 |
| 5TT0 | 2016 | 0 |
| 5TR9 | 2016 | 0 |
| 5TQV | 2016 | 0 |
| 6W14 | 2020 | 0 |
| 6W15 | 2020 | 0 |
| 6W2O | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5koi | - | https://www.mdpi.com/2077-0375/13/6/568 | The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs | 2023 | SA Badiee, UH Isu, E Khodadadi, M Moradi- Membranes, 2023 - mdpi.com | By exploring the structural and functional features of PDB files for each protein by resolution, starting with higher-resolution structures and progressing to lower-resolution structures Table 1. Available PDB files for MRP1, Pgp, Sav1866, and MsbA transporter proteins. ... 5KOI [59] 3.85 Å X-ray |
| 2 | 4xwi | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1459318 | Towards novel inhibitors against KdsB: A highly specific and selective broad-spectrum bacterial enzyme | 2018 | S Ahmad, S Raza, A Abro, KR Liedl- Biomolecular Structure, 2018 - Taylor & Francis | from Protein Data Bank ( PDB ) with PDB ID, 4FCU (Berman et al., 2006). The protein is present (A. baumannii), 3K8D (E.coli), 4XWI (P. aeruginosa), 3TQD (C. Burnetii), 3QAM (V explicates enzyme structure stability and strong binding affinity of the compound towards the |
| 3 | 4egq | - | https://www.sciencedirect.com/science/article/pii/S0167732217360439 | Identification of natural inhibitors against Acinetobacter baumanniid-alanine-d-alanine ligase enzyme: A multi-spectrum in silico approach | 2018 | S Ahmad, S Raza, SW Abbasi, SS Azam- Journal of Molecular Liquids, 2018 - Elsevier | The protein after retrieval from PDB was subjected to a preparation phase, where only one 5), with minor effect on the overall structure baumannii), (3V4Z, Yersinia pestis), (4DGJ, Burkholderia xenovorans), (4EGO, Burkholderia ambifaria), ( 4EGQ , Burkholderia pseudomallei) |
| 4 | 3ijp | - | http://www.biochemj.org/content/early/2017/11/28/BCJ20170709.abstract | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher order assembly | 2017 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2017 - biochemj.org | Cirilli, M., Zheng, RJ, Scapin, G., and Blanchard, JS (2003) The three-dimensional structures of the Structural and mutagenic analysis of relaxed nucleotide specificity Scapin, G., Reddy, SG, Zheng, R., and Blanchard, JS (1997) Three-dimensional structure 490 of Escherichia |
| 5 | 4ywj | 4f3y, 3ijp | https://portlandpress.com/biochemj/article-abstract/475/1/137/50160 | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher-order assembly | 2018 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2018 - portlandpress.com | DHDPR from a total of nine bacterial species, whereas no plant DHDPR structures were previously and X-ray crystallography to demonstrate how small elements of secondary structure are able Additionally, we use kinetic assays and an analysis of the structural flexibility of the |
| 6 | 3gp5 | - | http://www.sciencedirect.com/science/article/pii/S0020169314001042 | Vanadate in structural biology | 2014 | S Akabayov, B Akabayov - Inorganica Chimica Acta, 2014 - Elsevier | ... Protein data bank; Data mining; Protein-vanadate complex. ... Structures of biological macromolecules containing ligands with vanadium were downloaded from the Protein Databank (www.pdb.org ... PDB, ProteinOrganism, CLASS a, Geometry b, DNA/RNA c, Metal Ion d, TS e, Ligand ... |
| 7 | 6vyb | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1778537 | Ethnomedicines of Indian origin for combating COVID-19 infection by hampering the viral replication: using structure-based drug discovery approach | 2021 | S Alagu Lakshmi, RMB Shafreen, A Priya- Structure and, 2021 - Taylor & Francis | CoV-2 main protease ( PDB ID: 5R82. pdb ), spike protein ( PDB ID: 6VYB . pdb ) and human In order to minimize the energy, PDB structures of the target proteins were refined through for combating COVID-19 infection by hampering the viral replication: using structure -based drug |
| 8 | 3qxz | 3moy, 4qfe, 5ji5, 5b8i, 3pk0, 3rsi | https://discovery.dundee.ac.uk/ws/portalfiles/portal/28493615/127050.full.pdf | Human Missense Variation is Constrained by Domain Structure and | 2017 | SA MacGowan, F Madeira, T Britto-Borges - discovery.dundee.ac.uk | the protein structure level. Figure 2B shows that this result extends to other protein 109 For 182 an example see Glu 295 and Ser 332 in PDB ID: 3e00 chain D.).21 These important 183 Glu370 that recent structural studies suggest is at the interface with Ubiquitin22 and so 187 |
| 9 | 3gaf | - | https://baadalsg.inflibnet.ac.in/jspui/bitstream/10603/196179/12/12_chapter%204.... | Sequence and structural studies of proteins associated with cell wall biosynthesis lipolysis and isoniazid drug resistance in Mycobacterium tuberculosis | 2018 | S Anishetty - 2018 - baadalsg.inflibnet.ac.in | Page 4. 63 of recognizing the native structure out of decoy structures 3D coordinates of Isoniazid-NAD adduct ( PDB : 2IDZ) and Triclosan ( PDB : 3OID) was obtained from PDB Rv0547c Oxidoreductase 5e-35 20% FX6-K - Rv0927c Oxidoreductase 1e-32 23% FX6-K 3GAF 41.32 |
| 10 | 4j07 | - | http://informahealthcare.com/doi/abs/10.1517/17460441.2013.826188 | The eradication of leprosy: molecular modeling techniques for novel drug discovery | 2013 | S Anusuya, J Natarajan - Expert opinion on drug discovery, 2013 - informahealthcare.com | ... M. leprae (Table 1) were elucidated using X-ray diffraction methods and were deposited in ProteinData Bank (PDB). ... In case of the structure of riboflavin synthase (PDB ID: 4JO7), the resolution is 1.95 ? which ... Table 2. Results of Ramachandran plot analysis for 1BVS and 4J07. ... |