We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4POB | 2014 | 0 |
| 8DF5 | 2022 | 0 |
| 8D57 | 2022 | 0 |
| 8D2Z | 2023 | 0 |
| 8D1X | 2022 | 0 |
| 8CXA | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 8CU9 | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CTR | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rih | - | https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/200458/5/dnogk02134... | Studies on Structure-Function Relationship and Conversion of Coenzyme Requirement in Bacterial -Keto Acid Reductases Responsible for Metabolism of | 2015 | R Takase - 2015 - repository.kulib.kyoto-u.ac.jp | ... Data Page 5. 2 Bank ( PDB ) (www.wwpdb.org/) (40), in proportion to the progress in the field of structural biology. Structure -based biotechnology is expected to become an important part of post- structural biology. For ... |
| 2 | 6wpt | - | https://hal.archives-ouvertes.fr/hal-03257466/document | Hyaluronic Acid-2-Deoxy-D-Glucose Conjugate Act as a Promising Targeted Drug Delivery Option for the Treatment of COVID-19 | 2021 | R Thirumalaisamy, V Aroulmoji- International, 2021 - hal.archives-ouvertes.fr | of 2DG and HA-2DG was submitted to Online SMILES convertor and Structure file generator proteases Mpro (6LU7), papain like protease PLpro (6W9C), spike protein ( 6WPT ), RNA dependent RNA polymerase (6M71) was retrieved from RCSB PDB database (https |
| 3 | 3qdf | 3r6o, 3rr6 | http://www.biochemj.org/bj/449/bj4490051.htm | Crystal structures of Cg1458 reveal a catalytic lid domain and a common catalytic mechanism for the FAH family | 2013 | R Tingting, G Yanyan, M May, Z Wenjun? - Biochemical Journal, 2013 - biochemj.org | ... Source/description, PDB ID, Resolution (?), Sequence identity (%), Aligned residues, Backbone RMSD (?). C. glutamicum/Cg1458, 4DBF, 1.90, ?, ?, ?. 4DBH, 2.00, ?, ?, ?. Mycobacterium marinum M/MMAR-1718, 3QDF, 2.05, 56.73, 245, 1.11. ... |
| 4 | 3r1j | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765361/ | Protein Similarity Networks Reveal Relationships among Sequence, Structure, and Function within the Cupin Superfamily | 2013 | R Uberto, EW Moomaw - PLoS One, 2013 - journals.plos.org | File S1 Combined Supporting Information Files - Alpha-ketoglutarate-dependent taurine dioxygenase Mycobacterium avium 3r1j |
| 5 | 4lc3 | - | http://link.springer.com/article/10.1007/s00044-017-1822-0 | Structural and functional characterization of a unique hypothetical protein (WP_003901628. 1) of Mycobacterium tuberculosis: a computational approach | 2017 | R Uddin, S Rafi- Medicinal Chemistry Research, 2017 - Springer | ... 2011). Table 8 RMSD of top Z-ranked ProBis ligands after docking with modeled structure . S.No. PDB ID. 1 st ranked RMSD (). Lowest RMSD (). 1. 1O69. 4.93. 3.45. 2. 1MDO. 3.02. 2.89. 3. 2C81. 6.43. 3.9. 4. ... 8. 3UWC. 3.37. 3.36. 9. 4K2M. 9.68. 2.5. 10. 4LC3 . 8.24. 3.91. 11. 1B9H ... |
| 6 | 3ge4 | - | http://www.sciencedirect.com/science/article/pii/S0006349511009374 | Relation between molecular shape and the morphology of self-assembling aggregates: a simulation study | 2011 | R V?cha, D Frenkel - Biophysical journal, 2011 - Elsevier | Supporting Material Figure2.: A cut through the middle of a protein vesicle formed as bilayer of alpha-helices (3GE4 in Protein Database), where alpha-helices are visualised as rods and unstructured loops as wires |
| 7 | 3svk | - | http://pubs.acs.org/doi/full/10.1021/cb400007k | Structure of Mycobacterial beta-Oxidation Trifunctional Enzyme Reveals Its Altered Assembly and Putative Substrate Channeling Pathway | 2013 | R Venkatesan, RK Wierenga - ACS chemical biology, 2013 - ACS Publications | ... From sequence alignments it is also found that the Mycobacterium avium thiolase FadA1, whose crystal structure (PDB id: 3SVK) has been deposited recently, has the same unique sequence features as mtTFE-?. This gene ... |
| 8 | 3gvi | - | http://www.wjpps.com/admin/assets/article_issue/1382162610.pdf | Rhizobitoxine enhances nodulation by inhibiting ethylene synthesis of bradyrhizobium elkanii from lespedeza species: validation by homology modelling and | 2013 | R Vijayan, P Palaniappan, SA Tongmin - World J of pharm and , 2013 - wjpps.com | ... docking studies with the known inhibitor rhizobitoxine. The crystal structure of protein was taken from the Protein Data Bank (entry PDB code: 3GVI). So, we considered the active site residues predicted from the LIGSITE and CASTp has been used for binding with ... |
| 9 | 3dms | - | https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S17-S2 | Functional relevance of dynamic properties of Dimeric NADP-dependent Isocitrate Dehydrogenases | 2012 | R Vinekar, C Verma, I Ghosh - BMC , 2012 - bmcbioinformatics.biomedcentral. | ... The current study therefore concentrates mainly on dimeric NADP-dependent IDHs from subfamilies I and II and additionally subfamily IV (Table 1), with an emphasis on regulation in dimeric M.tb IDH. Burcholderi apseudomallei BpIDH Q63WJ4_BURPS 3DMS. ... |
| 10 | 3rr2 | - | http://www.sciencedirect.com/science/article/pii/S1570963913003543 | Biochemical properties of nematode< i> O</i>-acetylserine (thiol) lyase paralogs imply their distinct roles in hydrogen sulfide homeostasis | 2013 | R Vozdek, A Hn?zda, J Krijt, L ?er?, V Ko?ich - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013 - Elsevier | ... First, their amino acid sequences, together with sequences of OAS-TL (PDB ID: 1D6S, 1FCJ, 1O58, 1VE1, 1Y7L, 1Z7W, 2EGU, 2JC3, 2PQM, 2Q3D, 2V03 and 3RR2) and CBS (PDB ID: 1JBQ and 3PC3) were aligned using MUSCLE 3.8.31 [23]. ... |