We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5v6d | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3188389 | A Centipede Toxin Family Defines a New Ancient Class of CS Defensins | 2018 | TS Dash, T Shafee, PJ Harvey, C Zhang- Available at SSRN, 2018 - papers.ssrn.com | structure of Sm2 against all structures of proteins contained within the Protein Data Bank ( PDB ) that are composed of more than 30 amino acids Thus, the minimal cysteine motif is by itself sufficient to generate a stable CS structure . Although the 2ds-CS architecture has |
| 2 | 3ijp | - | http://www.sciencedirect.com/science/article/pii/S0014579311005503 | Structure and nucleotide specificity of< i> Staphylococcus aureus</i> dihydrodipicolinate reductase (DapB) | 2011 | TS Girish, V Navratna, B Gopal - FEBS letters, 2011 - Elsevier | ... from Escherichia coli, Mycobacterium tuberculosis, Thermotoga maritima and Bartonella henselae have been determined ( [10], [11] and [18]; PDB:1VM6 (Joint Centre for Structural Genomics) and PDB:3IJP (Seattle Structural Genomics Center for Infectious Disease). ... |
| 3 | 3gmt | - | http://www.sciencedirect.com/science/article/pii/S2211546314000679 | Adenylate kinase from< i> Streptococcus pneumoniae</i> is essential for growth through its catalytic activity | 2014 | TT Thach, TT Luong, S Lee, DK Rhee - FEBS Open Bio, 2014 - Elsevier | ... Open, ligand-free SpAdK structure was solved by molecular replacement using PHENIX [35] with AdK from Marinibacillus marinus (PDB ID: 3FB4) and Burkholderia pseudomallei (PDB ID: 3GMT) as search models. ... |
| 4 | 3k2c | - | https://www.sciencedirect.com/science/article/pii/S016158901930197X | The Schistosoma mansoni cyclophilin A epitope 107-121 induces a protective immune response against schistosomiasis | 2019 | TT de Melo, MM Mendes, CC Alves, GB Carvalho- Molecular, 2019 - Elsevier | The resulting structure was predicted using six templates (4I9Y: e3 sumo-protein ligase Cyclophilin from Homo sapiens, variant A; 1IHG: bovine cyclophilin 40, 3K2C : peptidyl-prolyl cuniculi; 1XO7: Cyclophilin from Trypanosoma cruzithe bovine Cyclophilin 40 ( PDB code: c1ihgA |
| 5 | 3rd5 | - | http://csc.hcmiu.edu.vn:8080/dspace/handle/123456789/494 | Comparatives study on sequence structure function relationship of human short-chain dehydrogenases/reductases | 2013 | TTN Nu - 2013 - csc.hcmiu.edu.vn | ... Table 1 : PDB code and name of five representative 4. 3rd5 chain A, Retinol dehydrogenase 11... |
| 6 | 5td3 | - | https://www.jstage.jst.go.jp/article/jgam/advpub/0/advpub_2019.06.002/_article/-... | Cloning, expression and characterization of catechol 1, 2-dioxygenase from Burkholderia cepacia | 2019 | TVN Thi, DDH Sinh, THT Le, ND Huy- The Journal of general, 2019 - jstage.jst.go.jp | Catechol 1,2-dioxygenase from the Gram-positive Rhodococcus opacus 1CP: 337 quantitative structure /activity relationship and the crystal structures of native enzyme 338 radioresistens LMG S13 ( PDB : 2XSU), B. vietnamiensis LMG 22486 ( PDB : 5TD3 ), R. 375 |
| 7 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24238/full | Identification of a novel ligand binding site in phosphoserine phosphatase from the hyperthermophilic archaeon Thermococcus onnurineus | 2013 | TY Jung, YS Kim, BH Oh, E Woo - Proteins: Structure, Function, and Bioinformatics, 2013 - Wiley Online Library | ... Flexible movement between the open structure (PDB ID: 1L8L, 1RKV, 2FEA, and 3M1Y), colored in bright orange, and closed structures (PDB ID: 1F5S, 1L7M, 1J97, 1L7P, 3P96, and 3KD3), colored in bluewhite, were analyzed by the program DynDom. ... |
| 8 | 3h81 | 4f47, 3rsi, 3r9s, 3r9t, 3oc7 | http://www.sciencedirect.com/science/article/pii/S0031942213002008 | Sequence analysis and structure prediction of enoyl-CoA hydratase from< i> Avicennia marina</i>: Implication of various amino acid residues on substrate–enzyme interactions | 2013 | U Jabeen, A Salim - Phytochemistry, 2013 - Elsevier | ... Appendix A. Supplementary data. ...The second clade has many subdivisions. Enoyl-CoA hydratases in this clade belonged to Bacillus anthracis (3KQF, 3PEA), Geobacillus kaustophilus (2PBP), Mycobacterium tuberculosis (3PZK, 3H81, 3Q0J), Rattus norvegicus (1EY3, 1MJ3, 1DUB, 1DCI), Homo sapiens (2HW5, 2VRE), Escherichia coli K-12 (4FZW), Mycobacterium abscessus (3RSI) ... |
| 9 | 4g67 | 4f3n | https://www.sciencedirect.com/science/article/pii/S2211124718311938 | Proteobacterial Origin of Protein Arginine Methylation and Regulation of Complex I Assembly by MidA | 2018 | UFS Hameed, O Sanislav, ST Lay, SJ Annesley- Cell reports, 2018 - Elsevier | (A) Secondary structure representation of the MidA crystal structure bound to SAH (E) Superimposition of MidA (green) onto the putative protein Q6N1P6 ( PDB : 1zkd) from R. palustris (orange) and ACR COG1565 ( PDB : 4g67 ) from B. thailandensis (purple); RMSD = 1.68 |
| 10 | 3v7o | - | http://ijsrst.com/paper/232.pdf | Molecular Docking Studies of E-Bola Virus Protein VP30 | 2016 | UPA Shaikh, YN Joshi - 2016 - ijsrst.com | ... III. RESULT AND DISCUSSION 1. Homology Modeling and Validation: PDB id3V7O (Crystal structure of the C terminus domain of Ebola virus) was selectedas template with 37.50% sequence identity to query sequence. ... |