We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4lsm | - | http://www.sciencedirect.com/science/article/pii/S1570963914000296 | Biochemical characterisation of glyceraldehyde 3-phosphate dehydrogenase (GAPDH) from the liver fluke, Fasciola hepatica | 2014 | VL Zinsser, EM Hoey, A Trudgett, DJ Timson - Biochimica et Biophysica …, 2014 - Elsevier | ... other parasites, for example Plasmodium falciparum (PDB: 1YWG [52]; rmsd 1.226 Å over 8358equivalent atoms) Trypanosoma brucei (PDB: 2X0N, [53]; rmsd 2.009 Å over 8522 equivalentatoms) and Trypanosoma cruzi (PDB: 4LSM, note that this structure only contains ... |
| 2 | 3enk | - | http://journals.cambridge.org/abstract_S003118201400136X | UDP-galactose 4′-epimerase from the liver fluke, Fasciola hepatica: biochemical characterization of the enzyme and identification of inhibitors | 2014 | VL ZINSSER, S LINDERT, S BANFORD… - …, 2014 - Cambridge Univ Press | ... These results demonstrate that, despite the structural and biochemical similarities of FhGALEand HsGALE, it is possible to discover compounds which preferentially inhibit ... pymol.org) to thesubunits of Burkholderia pseudo- mallei GALE structure (PDB ID: 3ENK) and NAD+ ... |
| 3 | 4qji | - | https://www.nature.com/articles/s41467-020-20224-x | Inhibiting Mycobacterium tuberculosis CoaBC by targeting an allosteric site | 2021 | V Mendes, SR Green, JC Evans, J Hess- Nature, 2021 - nature.com | Coenzyme A (CoA) is a fundamental co-factor for all life, involved in numerous metabolic pathways and cellular processes, and its biosynthetic pathway has raised substantial interest as a drug target against multiple pathogens including Mycobacterium tuberculosis. The biosynthesis |
| 4 | 3p32 | - | https://ritdml.rit.edu/handle/1850/15250 | Mathematical Modeling and Screening of Ligand Binding Sites in Protein using the Tetrahedral Motif Method and Double-Centroid Representation | 2012 | VM Reyes - 2012 - ritdml.rit.edu | ... unannotated structures in PDB with unknown function to identify possible candidates that might have FMN bound to them. _ + ... Structures from the PDB for Screening using the screening procedure established for the above mathematical model for the binding site.[11] Page 19. ... |
| 5 | 4ege | - | http://www.sciencedirect.com/science/article/pii/S1570963916302278 | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro | 2017 | VN Are, A Kumar, S Kumar, VD Goyal, B Ghosh - et Biophysica Acta (BBA , 2017 - Elsevier | ... are lacking with literature reports of either only structural data (PDB entries; 1WN1, 1WY2, 3Q6D,2IW2, 4EGE) or only ... for this was prepared by Chainsaw [26] using the XPDxc protein sequenceand the structure of a putative XPD from Thermococcus sibiricus (PDB: 4FKC) [8 ... |
| 6 | 4ege | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.25389/full | Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases | 2017 | VN Are, SN Jamdar, B Ghosh, VD Goyal- Proteins: Structure,, 2017 - Wiley Online Library | ... significant sequence homology with any of the known protein sequences in PDB . However, the structural superposition search using N-domain structure at Dali server ... M24 dipeptidase from Mycobacterium ulcerans ( PDB code: 4EGE ) sharing 14% sequence identity with it. ... |
| 7 | 3s6d | - | https://www.biorxiv.org/content/10.1101/2020.12.04.412312v2.abstract | Leptospira interrogans triosephosphate isomerase: exploring the structural determinants of stability, high reaction rate and specificity. | 2020 | V Pareek, V Dhayabarn, H Balaram, PR Krishnaswamy- bioRxiv, 2020 - biorxiv.org | Contrary to our observation for the LiTIM structure , the backbone -CO of Trp11 has previously been observed in other TIMs (eg Page 15. 15 rare example of Glu at position 94 (LiTIM numbering) is in Coccidiodes immitis ( PDB ID: 3S6D ; Figures S2 and S5B) |
| 8 | 4f2n | 3js4 | http://www.sciencedirect.com/science/article/pii/S0141813017323541 | Anion interactions in active centers of superoxide dismutases | 2017 | VR Ribi, S Stojanovi, MV Zlatovi- International Journal of Biological, 2017 - Elsevier | ... 2rcv, 2w7w, 3ak2, 3ce1, 3dc6, 3evk, 3f7l, 3h1s, 3js4, 3lio, 3lsu, 3mds, 3pu7, 3tqj, 4br6, 4c7u, 4f2n , 4ffk, 4yet ... For example, in the crystal structure of superoxide dismutase (Fe) (sodB) from Coxiella burnetii ( PDB ID: 3tqj), there exists a anion interaction structure motif (Fig ... |
| 9 | 3nfw | - | http://www.sciencedirect.com/science/article/pii/S0944501316301549 | Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans | 2016 | V Sedlek, T Klumpler, J Marek, I Kuera - Microbiological Research, 2016 - Elsevier | ...Sequence and structural comparisons of FerA with a flavin reductase like domain protein family (PF01613). 3NFW E5Q9D7 NmoB Mycobacterium thermoresistibile ... |
| 10 | 3gwc | - | http://search.proquest.com/openview/aa0a9dc6c9a061aa0200e2456abf28ac/1?pq-origsi... | Virtual Screening of Novel Potent Molecules Targeting enoyl-ACP reductase as Antitubercular Agents by Molecular Docking studies | 2019 | V Shivakumar, PM Ramsana, M Risfa- Journal of, 2019 - search.proquest.com | Fig 2. Structure and portions nomenclature of linezolid V. Shivakumar et al /J. Pharm. Sci. & Res NO. PDB ID RESOLUTION ENZYMES YEAR 1 2AF6 2.01 Trymidylate synthase 2005 2 2X23 1.80 enoyl-ACP reductase 2010 3 3GWC 1.9 Trymidylate synthase 2009 |