We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6TYS | 2020 | 18 |
| 6WS6 | 2020 | 18 |
| 3IJP | 2009 | 17 |
| 4IX8 | 2014 | 17 |
| 3EOO | 2008 | 17 |
| 3SWO | 2011 | 16 |
| 3TCQ | 2012 | 16 |
| 6BFU | 2017 | 16 |
| 7LY2 | 2021 | 15 |
| 3RD5 | 2011 | 15 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ohc | - | http://bq.facmed.unam.mx/tab/wp-content/uploads/2020/06/9-Gonzalez-Segura.pdf | Orotato fosforribosiltransferasa. Pasado, presente y futuro en el estudio estructural de las protenas. | 2020 | L Gonzlez-Segura, EI Carrizosa-Carbajal - bq.facmed.unam.mx | Past, present and future in the structural study of proteins Key words: Phosphoribosyltransferase; three- dimensional structure ; conformational change; inhibition; pyrimidines synthesis str (PDBs 3M3H y 4RV4), de Burkholderia cenocepacia ( PDB 4OHC ), de Corynebacterium |
| 2 | 3rd5 | - | http://brain.oxfordjournals.org/content/early/2013/12/24/brain.awt338.short | The tumour suppressor gene WWOX is mutated in autosomal recessive cerebellar ataxia with epilepsy and mental retardation | 2013 | M Mallaret, M Synofzik, J Lee, CA Sagum, M Mahajnah? - Brain, 2013 - Oxford Univ Press | ... The mutated glycine 372 is located in the C-terminal part of the dehydrogenase/reductase domain of WWOX. The closest homologue of this domain with known 3D structure is 3RD5, a bacterial small dehydrogenase/reductase (pdb code 3RD5). ... |
| 3 | 4ed9 | - | http://broncoscholar.library.cpp.edu/handle/10211.3/215321 | Overexpression and Purification of the Protein BaiK for Structural Characterization by X-Ray Crystallography | 2020 | S Khuu - 2020 - broncoscholar.library.cpp.edu | Initially , BaiK was overexpressed to produce large quantity of protein for use in structural and structure being very similar to histidine while also being added at a high concentration. 11 formation of more ordered crystal structures . The effective concentration of the protein |
| 4 | 3ijp | - | http://cdn.intechopen.com/pdfs/30570/InTech-Enzymology_of_bacterial_lysine_biosy... | Enzymology of bacterial lysine biosynthesis | 2012 | C Dogovski, SC Atkinson? - Biochemistry, Prof. Deniz Ekinci (Ed. ), ISBN: 978-953-51-0076-8, 2012 - cdn.intechopen.com | ... 3.2 Structure of DHDPR 3.2.1 Subunit and quaternary structure of DHDPR The three-dimensional structure of DHDPR has been elucidated by X-ray crystallography from five diverse bacterial species, namely, Bartonella henselae, (PDB: 3IJP), E. coli (Scapin et al., 1995, 1997 ... |
| 5 | 3gvf | - | http://cdn.intechopen.com/pdfs-wm/46885.pdf | From Tilings to FibersBio-mathematical Aspects of Fold Plasticity | 2014 | C Lesieur, L Vuillon - 2014 - cdn.intechopen.com | ... According to the PDB (Protein Data Bank [30] ) where all available atomic structures of proteins are stored ... x-ray structure of the cholera toxin B pentamer (CtxB5) is shown (PDB code 3CHB). ... Example with the protein 3GVF (PDB code), a D3 symmetry oligomer made of 6 chains ... |
| 6 | 3f0d | 4l83, 4lsm, 4lhr, 3swo, 4nbr, 4kzp, 4mpq, 4kyx, 3urr, 3v7n, 4lsb, 4ni5, 3pme, 4maq, 3quv, 4lfy, 3qxz, 4efi, 3uw3, 4nim, 3m1x, 4mg4, 4lc3, 4jqp, 3laa, 4kzk, 4ijn, 4lvu, 3te8, 3md7, 3mqd | http://chur.chu.edu.tw/handle/987654321/42826 | A Study of Residue Contact Number Among the Amino Acid and Structural Alphabet | 2015 | - 2015 - chur.chu.edu.tw | ... present in the protein inside or outside with the local secondary structure and demonstratePage 4. iii ... Keyword: Structural Alphabet, Amino Acid Interaction, Amino Acid contact, scoringmatrix Page 5. ... 3-1PDB DSSP .... ... |
| 7 | 3p10 | - | http://commons.lib.niu.edu/handle/10843/17504 | Characterization of The Binding Thermodynamics of Metal Cofactors to Burkholderia pseudomallei IspF | 2017 | KT Do - 2017 - commons.lib.niu.edu | ... catalytic function. Figure 1: Crystal structure of Burkholderia pseudomallei IspF (PDB: 3P10).Yellow spheres indicate catalytic Zinc ions. Page 7. The ... cyan). A single protein crystalstructure (PDB ID: 3P10) is, depicted for clarity. Key interactions ... |
| 8 | 3p10 | 3mbm, 3q8h, 3qhd, 3p0z | http://commons.lib.niu.edu/handle/10843/21095 | L-Tryptophan hydroxamic acid derivatives as Burkholderia pseudomallei IspF inhibitors | 2017 | CA Muller - 2017 - commons.lib.niu.edu | bank ( PDB ) file of the Burkholderia pseudomallei IspF crystal structure (3P0Z) was uploaded to AutoDock Tools. The water molecules were removed from the enzyme, as well as any co- crystallized structures (FOL955 and cytidine) and free ions (K+ and Cl-). This cleaned up |
| 9 | 4emd | 4ed4, 4dxl | http://commons.lib.niu.edu/handle/10843/21449 | Evaluation of IspE for inhibitor design in the non-mevalonate pathway | 2018 | KB Hoerchler - 2018 - commons.lib.niu.edu | crystal structures were obtained ( PDB : 1UEK, 1OJ4).38,39 IspE possesses structural features Figure 1-5. Crystal Structures of MaIspE The left structure ( PDB : 4EMD ) co-crystallized with CMP and a sulfate ion while the right ( PDB : 4ED4) co-crystallized with ATP.42 |
| 10 | 3qhd | 3P0Z, 3p0z | http://commons.lib.niu.edu/handle/10843/21551 | Design, synthesis, and evaluation of potential Burkholderia pseudomallei IspF inhibitors | 2019 | S Watkins - 2019 - commons.lib.niu.edu | xvi nOe Nuclear Overhauser enhancement/nuclear Overhauser effect PDB Protein Data Bank Pf Plasmodium falciparum ppm Parts per million RST Relative saturation transfer SAR Structure activity relationship SSGCID Seattle Structural Genomics Center for Infectious Disease ... It is possible the sp2 N of the imidazole is binding to the Zn2+, as seen in the crystal structures of 88 in BpIspF (3P0Z, 3QHD). |