We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3CXK | 2008 | 13 |
| 3CEZ | 2008 | 13 |
| 7JV6 | 2021 | 13 |
| 5DVW | 2015 | 13 |
| 4O3V | 2014 | 13 |
| 3MEN | 2010 | 12 |
| 3MD7 | 2010 | 12 |
| 3H81 | 2009 | 12 |
| 3L56 | 2010 | 12 |
| 3KHW | 2010 | 12 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3f0g | 3ieq | http://discovery.dundee.ac.uk/portal/files/3384819/O'Rourke_phd_2013.pdf | Structural studies to inform antimicrobial drug discovery and the basis of immunity against T6 effectors | 2013 | P O'Rourke - 2013 - discovery.dundee.ac.uk | ... Search models for molecular replacement used coordinates from orthologues in E. coli (PDB code: 1GX1; ~33% identity, Kemp et al., 2002) and B.pseudomallei (PDB code: 3F0G;63%,Begley et al., 2011) for PfIspF and BcIspF respectively, edited to remove all non-protein atoms. ... |
| 2 | 3qbp | 3qh8 | http://dl.acm.org/citation.cfm?id=2213792 | Protein surface characterization using an invariant descriptor | 2011 | ZA Deeb, DA Adjeroh, BH Jiang - Journal of Biomedical Imaging, 2011 - dl.acm.org | ... 1. Introduction The Protein Data Bank (http://www.pdb.org/pdb/home/ home.do) (PDB) currently has more than 3000 protein struc- tures classified as uncharacterized or as proteins of unknown function. This is about 5% of the total structures in PDB. ... |
| 3 | 3meq | - | http://d-nb.info/1035623692/34 | Reaction and protein engineering employing a carbonyl reductase from candida parapsilosis | 2012 | A Jakoblinnert, UDMB Ansorge-Schumacher - 2012 - d-nb.info | ... Four X-ray templates were selected for modeling the CPCR1 structure (349aa): Yeast ADH I from S. cerevisiae with bound trifluorethanol (347 residues with quality score 0.522, PDB ID 2HCY), ADH from Brucella melitensis (341 residues with quality score 0.590, PDB ID 3MEQ), ... |
| 4 | 4dut | - | http://dndx.cnjournals.com/html/2015/3/20140319.htm | Structural and Functional Characterization of Acinetobacter baumannii Nucleoside Diphosphate Kinase | 2015 | Progress in Biochemistry and Biophysics, 2015, 42(3): 260-267 | ... 82.12. 2.4 Structure determination and refinement. Initially,wild type structurewas determined by molecular replacement (MR) method using Burkholderiathailandensis NDK (PDB code 4DUT) as starting model. After ... |
| 5 | 3rqi | - | http://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-23211/Disser... | Molekulare Charakterisierung der Interaktion der Sensorkinase ETR1 aus Arabidopsis thaliana mit nachgeschalteten Komponenten des Ethylensignalwegs | 2012 | B Scharein - 2012 - docserv.uni-duesseldorf.de | ...Die strukturelle Information für Phospho‐Aspartat stammen aus dem Antwort Regulator Protein aus Burkholderia pseudomallei (pdb‐code 3RQI) ... |
| 6 | 3fvb | - | http://dr.library.brocku.ca/handle/10464/5755 | Towards reverse engineering of Photosystem II: Synergistic Computational and Experimental Approaches | 2014 | A Mahboob - 2014 - dr.library.brocku.ca | ... 62 3.4.3. Comparison of water channels found in this work to channelsobtained from static structures ..... ... 19 Figure 1.2 Structure of PSII dimershowing subunits CP47,D1,D2,cyt b559,CP43,cyt c550 ... |
| 7 | 4ohc | - | http://dspace.ncl.res.in:8080/xmlui/bitstream/handle/20.500.12252/2071/TH2183.pd... | Investigations into patterns of interactions involving sequentially neighboring amino acids in functional proteins | 2016 | M Sule - 2016 - dspace.ncl.res.in | Figure 6. The alpha helix in PDB : 3KB9 with the side chain hydrogen bonding pattern between While most motifs comprise primarily of regular secondary structures such as -helices or -sheets, the regions connecting these structural elements are irregular structure elements |
| 8 | 3nf4 | - | http://dspace.sunyconnect.suny.edu/handle/1951/62666 | Characterization by solution small angle X-ray scattering of the oligomeric state of structural genomics protein targets. | 2013 | K Basil - 2013 - dspace.sunyconnect.suny.edu | ... Then, the smallest asymmetrical unit (ASU) of the crystal is deposited in the Protein Data Bank (PDB)2. ... These proteins, called by the PDB codes 3NF4, 3LKE, 3KFO and 3NF2, were associated with an already known crystal structure listed in the PDB archive. ... |
| 9 | 3ifg | - | http://dx.plos.org/10.1371/journal.pone.0009280 | The X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions | 2010 | CG Langendorf, TLG Key, G Fenalti, WT Kan? - PloS one, 2010 - dx.plos.org | ... Shortly after the human SSADH structure was published, the structure of SSADH from Burkholderia pseudomallei, without a substrate or cofactor (PDB ID: 3ifg and 3ifh), was deposited into the PDB by the Seattle Structural Genomic Centre for Infectious Disease. ... |
| 10 | 3rqi | - | http://dx.plos.org/10.1371/journal.pone.0024173 | Phosphorylation alters the interaction of the Arabidopsis phosphotransfer protein AHP1 with its sensor kinase ETR1 | 2011 | B Scharein, G Groth - PloS one, 2011 - dx.plos.org | ... form. A homology model of AHP1 built on the crystal structure of the Hpt protein OsHP1 from rice (PDB code 1YVI) which is shown in Figure 5 further supports our experimental data that AHP1 forms homodimers in solution. The ... |