We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TA9 | 2022 | 0 |
| 7TAS | 2022 | 0 |
| 7TAT | 2022 | 0 |
| 7TCM | 2022 | 0 |
| 7TI7 | 2022 | 0 |
| 7TJ3 | 2022 | 0 |
| 7TLY | 2022 | 0 |
| 7TLZ | 2022 | 0 |
| 7TM0 | 2022 | 0 |
| 7TM4 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5b8i | - | http://www.plantphysiol.org/content/182/2/1142?utm_source=TrendMD&utm_medium=cpc... | Two SnRK2-interacting calcium sensor isoforms negatively regulate SnRK2 activity by different mechanisms | 2020 | K Tarnowski, M Klimecka, A Ciesielski, G Goch- Plant, 2020 - Am Soc Plant Biol | Skip to main content |
| 2 | 5b8i | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127630/ | Wen-Luo-Tong Decoction Attenuates Paclitaxel-Induced Peripheral Neuropathy by Regulating Linoleic Acid and Glycerophospholipid Metabolism Pathways | 2018 | F Wu, W Xu, B Deng, S Liu, C Deng, M Wu- Frontiers in, 2018 - ncbi.nlm.nih.gov | The structures of proteins were obtained from the Protein Data Bank ( PDB , https://www.rcsb.org/). Protein structures not available from PDB was homology modeled by (https://www.swissmodel. expasy.org) docking was carried out with Discovery Studio 3.5 (BIOVIA, USA) Table 6 Results of docking Proteins PDB ID pcat1 5b8i *Template of homology modeling. |
| 3 | 5b8i | - | https://www.sciencedirect.com/science/article/pii/S1570963919300445 | Fungal Lanosterol 14-demethylase: A target for next-generation antifungal design | 2020 | BC Monk, AA Sagatova, P Hosseini, YN Ruma- et Biophysica Acta (BBA, 2020 - Elsevier | cerevisiae LDM as a template ( PDB 4LXJ), suggested that crystal structure of the catalytic domain of human CYP51 ( PDB calcineurinB in complex with FK506 ( 5B8I ); S. cerevisiae Elf2 |
| 4 | 5b8i | - | https://journals.asm.org/doi/abs/10.1128/aac.01627-18 | In Vitro and In Vivo Assessment of FK506 Analogs as Novel Antifungal Drug Candidates | 2018 | Y Lee, KT Lee, SJ Lee, JY Beom- Antimicrobial agents, 2018 - Am Soc Microbiol | However, the structure of the fungal ternary complex from Coccidioides immitis has recently been reported ( PDB accession number 5B8I ), which would facilitate the rational design of FK506 analogs that can discriminate human and fungal calcineurins |
| 5 | 5bnt | - | https://onlinelibrary.wiley.com/doi/abs/10.1107/S2053230X17017241 | Structure of aspartate semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek- Section F: Structural, 2018 - Wiley Online Library | NADP+ (yellow spheres) is modeled using the structure of H. influenzae ASADH ( PDB PDB entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural entry 1t4b; Nichols et al., 2004) and Haemophilus influenzae (HiASADH; PDB entry 1pqu |
| 6 | 5bnt | - | https://scripts.iucr.org/cgi-bin/paper?dp5109 | Structure of aspartate -semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek, AK Arnette- Section F: Structural, 2018 - scripts.iucr.org | entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural N-acetyl- -glutamyl-phosphate reductases (ArgCs), including proteins with known structure : ArgCs from entry 2i3a; Cherney et al., 2007), Salmonella typhi- murium ( PDB entry 2g17 |
| 7 | 5bq2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512856/ | Structural insight into the binding of C60-derivatives with enoyl-pyruvate transferase from Helicobacter pylori | 2017 | M Teimouri, M Junaid, A Khan, H Zhang - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... BLAST, UDP-Nacetyl- glucosamine 1-carboxy-vinyl-transferase of Pseudomonas aeruginosa(PDB ID 5BQ2 ... The alignment of 5BQ2 and H. pylori Enoyl pyruvate transferase is given in Figure ...The modeled structure was superimposed on to the template, giving root mean square ... |
| 8 | 5bq2 | - | https://www.sciencedirect.com/science/article/pii/S0223523421004177 | The Mur Enzymes Chink in the Armour of Mycobacterium tuberculosis Cell Wall | 2021 | Y Shinde, I Ahmad, S Surana, H Patel- European Journal of Medicinal, 2021 - Elsevier | Mtb Mur ligases with the same catalytic mechanism share conserved amino acid regions and structural features that can conceivably exploit for the designing of the inhibitors, which can simultaneously target more than one isoforms (MurC-MurF) of the enzyme ... According to sequence homol- ogy search using BLASTp against PBD, 06 proteins structure tem- plates (PDB ID 3SG1, 5BQ2, 3ISS, 1A2N, 1UAE, and 3R38) were picked based on sequence identity and more statistical significance, |
| 9 | 5bq2 | - | https://www.sciencedirect.com/science/article/pii/S2352914818301060 | Molecular modelling and dynamic simulation of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (MurA) from Mycobacterium tuberculosis using in silico | 2018 | MA Isa, RS Majumdar, S Haider- Informatics in Medicine, 2018 - Elsevier | structure of UDP-N-acetylglucosamine -1-carboxyvinyltransferase (MurA) is not available in PDB . Therefore, the 3D structure was determined through the sequence, obtained from NCBI (Accession result of a BLASTp search against PBD, six proteins (3SG1, 5BQ2 , 3ISS, 1A2N |
| 10 | 5br9 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26545 | Protein target highlights in CASP15: Analysis of models by structure providers | 2023 | LT Alexander, J Durairaj- Proteins: Structure, 2023 - Wiley Online Library | structures superimposed on Ferrichrome-bound FhuA ( PDB ( PDB 1QFG, salmon) and FhuA from the target ( PDB 8B14, Red star: first resolved N-terminus of the different structures ... Structure of A. aeolicus TsaB. (A) The overlaid crystal structures of E. coli TsaB (PDB: 4YDU), T. maritima TsaB (PDB: 6N9A), S. typhimurium TsaB (PDB: 3ZET), P. s aeruginosa (PDB: 5BR9) |