We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TLY | 2022 | 0 |
| 7TLZ | 2022 | 0 |
| 7TM0 | 2022 | 0 |
| 7TM4 | 2022 | 0 |
| 7TM5 | 2022 | 0 |
| 7TM6 | 2022 | 0 |
| 7TM7 | 2022 | 0 |
| 7TM8 | 2022 | 0 |
| 7TM9 | 2022 | 0 |
| 7TMB | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5dvw | - | https://core.ac.uk/download/pdf/323470394.pdf | Napovedni modeli za identifikacijo potencialnih inhibitorjev razlinih proteinov virusa ebole | 2020 | V Hudi - 2020 - core.ac.uk | Monte Carlo MLR Multivariatna linearna regresija mRNA Informacijska ribonukleinska kislina NP Nukleoprotein PCA Metoda glavnih komponent PDB Podatkovna knjinica Knowledge of the viral structure gives us insight into the functioning of the virus and allows us to predict |
| 2 | 5dvw | - | https://etd.ohiolink.edu/!etd.send_file?accession=kent1511199228856908&dispositi... | Evolutionary Trends in Viral Pathogens within and between Outbreaks | 2017 | ME Saha - 2017 - etd.ohiolink.edu | for VP35 the 3FKE and 4YPI maps were used. For the other VP proteins: maps 4LDD and 4LDB for VP40, maps 2I8B and 5DVW |
| 3 | 5dwn | - | http://jb.asm.org/content/199/13/e00125-17.short | Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex | 2017 | EJ Loveridge, C Jones, MJ Bull, SC Moody - Journal of , 2017 - Am Soc Microbiol | ... protein [37], including conservation of the bleomycin-binding regions), phosphinothricinN-acetyltransferase (36% identical to phosphinothricin N-acetyltransferase from Brucella ovis[GenBank accession number WP_006155257; PDB accession number 5DWN], with significant ... |
| 4 | 5dxd | - | http://www.ejpmr.com/admin/assets/article_issue/1506597354.pdf | HOMOLOGY MODELING AND STRUCTURAL STUDIES OF CELL WALL BINDING PROTEIN -1, 3, GLUCANASE FROM NEUROSPORA CRASSA | 2017 | KA Kumar, SK Gousia, MM Moses, JNL Latha - ejpmr.com | 5dxd .1.A 17.97 monomer HHblits X-ray 1.70 0.29 0.30 Putative beta-glucanase normalized QMEAN score (0.40) and protein size in non-redundant set of PDB structures in the and Schwede, T. Toward the estimation of the absolute quality of individual protein structure models |
| 5 | 5eks | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | In-silico three dimensional structure prediction of important Neisseria meningitidis proteins. | 2021 | M Ali, M Aurongzeb, Y Rashid- Pakistan Journal of, 2021 - search.ebscohost.com | Chain A of 3-dehydroquinate Synthase from Acinetobacter Baumannii in complex with NAD+ with PDB id 5EKS (to be published) was selected as a template structure . The template had 98% query coverage and 56% sequence identity with the target sequence |
| 6 | 5eks | - | https://www.nature.com/articles/s41589-020-0587-9 | Architecture and functional dynamics of the pentafunctional AROM complex | 2020 | HA Veraszt, M Logotheti, R Albrecht, A Leitner- Nature Chemical, 2020 - nature.com | 2: The architecture and structural characteristics of the AROM complex. figure2. a, Definition of color scheme and order of domains in the CtAROM sequence, with gray numbers according to the succession of reactions in the pathway. b, CtAROM crystal structure with active sites ... The resulting representative PDB structures are 1NVA, 1XAL, 3QBD and 5EKS, for the DHQS |
| 7 | 5eks | - | https://journals.asm.org/doi/abs/10.1128/jb.00248-20 | Structural and biochemical analyses reveal that chlorogenic acid inhibits the shikimate pathway | 2020 | N Neetu, M Katiki, A Dev, S Gaur, S Tomar- Journal of, 2020 - Am Soc Microbiol | replacement method using the coordinates of chain A of DHQS enzyme from Vibrio cholerae ( PDB identifier [ID]: 3OKF Structural comparison of PaDHQS structure with its homologs closer to its homologs from A. nidulans (1SG6), V. cholerae (3OKF), A. baumannii ( 5EKS ), and H |
| 8 | 5el0 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25869 | An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. | 2019 | PI Koukos, J Roel-Touris, F Ambrosetti, C Geng- bioRxiv, 2019 - biorxiv.org | For the server submission of target 134, we modelled the protein on PDB entry 4d07 and the peptide on 4d07 and 4qh8, threading the target sequence on the peptide structure of the templates 5el0 and followed similar strategies as for target 134. Template-based targets |
| 9 | 5eln | 3q1t, 4efi | http://www.pnas.org/content/114/43/11428.short | Self-association of a highly charged arginine-rich cell-penetrating peptide | 2017 | G Tesei, M Vazdar, MR Jensen- Proceedings of the, 2017 - National Acad Sciences | ionic strengths, owing to an interaction mode which is present in the structure of a MD simulations elucidate the origin of the R10R10 attraction by providing structural information on in biological systems by inspection of protein crystal structures in the Protein Data Bank ( PDB ) |
| 10 | 5elo | 6c86, 5vl1, 6aqg | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25699 | Side chain rotameric changes and backbone dynamics enable specific cladosporin binding in Plasmodium falciparum lysyltRNA synthetase | 2019 | J ChhibberGoel, A Sharma- Proteins: Structure, Function, and, 2019 - Wiley Online Library | ( PDB : apo 6C86, holo 5ELO ) and M. ulcerans (MuKRS) ( PDB : apo 5VL1, holo re-arrangements and are noted as 1 to 4 for all the four PDB data sets (Table 1 and Fig. 1). In based on structural analyses. Our analyses also provide a platform for structure -guided |