We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6MJK | 2018 | 0 |
| 6N0W | 2018 | 0 |
| 6N1M | 2018 | 0 |
| 6NB0 | 2018 | 0 |
| 6NB2 | 2019 | 0 |
| 6NBM | 2019 | 0 |
| 6NDR | 2018 | 0 |
| 6NHI | 2019 | 0 |
| 6NRZ | 2019 | 0 |
| 6NUP | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3pfd | - | https://www.sciencedirect.com/science/article/pii/S0141022918305313 | Site-directed mutation to improve the enzymatic activity of 5-carboxy-2-pentenoyl-CoA reductase for enhancing adipic acid biosynthesis | 2019 | J Yang, Y Lu, Y Zhao, Z Bai, Z Ma, Y Deng- Enzyme and Microbial, 2019 - Elsevier | 3PFD was the PDB ID of the template. Therefore, we used 3PFD as the template to build the homology model of Tfu_1647 protein using DS 2017R2 [17] We then used the Deriding-like force field in DS 2017R2 to optimize the structure to ensure that we produced a |
| 2 | 3v2i | - | http://www.mdpi.com/2079-6382/5/2/16/htm | Small Molecule Docking Supports Broad and Narrow Spectrum Potential for the Inhibition of the Novel Antibiotic Target Bacterial Pth1 | 2016 | PP Ferguson, WB Holloway, WN Setzer, H McFeeters - Antibiotics, 2016 - mdpi.com | ... were obtained from the Protein Data Bank and each structure was analyzed for ... The Pth1 setincluded eight bacterial structures: Escherichia coli (PDB 2PTH) [11 ... aeruginosa (4FYJ) [14],Francisella tularensis (3NEA) [15], Burkholderia thailandensis (3V2I) [31], Acinetobacter ... |
| 3 | 5upg | 6cax | https://www.sciencedirect.com/science/article/pii/S0223523423002921 | Small molecule LpxC inhibitors against gram-negative bacteria: Advances and future perspectives | 2023 | Z Niu, P Lei, Y Wang, J Wang, J Yang- European Journal of, 2023 - Elsevier | -diphosphate ( PDB code: 2IER); (C) Crystal structure of the E. coli LpxC/LPC-009 complex ( PDB code: 3P3G); (D) Co-crystal structure of LpxC-3 aeruginosa LpxC ( PDB code: 3UHM). |
| 4 | 2n6t | 2n6w | https://www.sciencedirect.com/science/article/pii/S0300908425001580 | Small molecule based targeting of the CssA RNA thermometer: insights from computational and biophysical approaches | 2025 | A Sharma, P Gopi, R Trivedi, D Kumar, J Gartia- Biochimie, 2025 - Elsevier | Targeting such RNA elements with small molecules would facilitate structure -based small molecule design with better affinity for the target RNA. For virtual screening of CssA RNAT binding small molecules, the three-dimensional structures of the CssA RNAs were downloaded from Protein Data Bank (PDB) [28]. Two RNAs with PDB structures as available were selected as receptors: CssA2 RNA thermometer (PDB: 2N6W) and top stem region of CssA (CssA3) (PDB: 2N6T) [27]. |
| 5 | 2lwk | - | https://portal.ichb.pl/wp-content/uploads/2023/02/Doktorat_AleksandraJarmoowicz.... | Small molecules interacting with Influenza virus RNA and SARS-CoV-2 RNA as potential inhibitors of replication | 2022 | A Jarmoowicz - portal.ichb.pl | M121 structural motif of segment 5 (+)RNA secondary structure was investigated by importance of the conserved secondary structure of mentioned structural motif and suggest that it |
| 6 | 2lwk | - | http://onlinelibrary.wiley.com/doi/10.1002/wrna.1373/full | Small molecules targeting viral RNA | 2016 | T Hermann - Wiley Interdisciplinary Reviews: RNA, 2016 - Wiley Online Library | ... The added tetraloop is indicated in gray. (c) Detail view of the ligand binding site in theNMR model, showing hydrogen atoms of the ligand 11. Structure images were preparedfrom PDB coordinate file 2LWK.[48]. Download figure to PowerPoint. ... |
| 7 | 5woq | - | https://www.nature.com/articles/s41586-023-06376-y | Small protein modules dictate prophage fates during polylysogeny | 2023 | JE Silpe, OP Duddy, GE Johnson, GA Beggs- Nature, 2023 - nature.com | Structural predictions and homologues predicted by the DALI server were aligned and... (b) Structural alignment of TF72 (brown) and TF63 (blue) as monomers with the highest scoring homologs: C.AhdI (green), C.BcII (orange), C.Esp1396I (pink), and ClgR (gray) (PDB ID: 1Y7Y, 2B5A, 3G5G, and 5WOQ, respectively). |
| 8 | 5u29 | - | https://repositorio.ufpb.br/jspui/handle/123456789/15841 | Sntese, elucidao estrutural e estudos in silico de novos compostos 2-amino-tiofnicos imdicos candidatos a frmacos antifngicos, antileishmanicida e | 2019 | ALC Pereira - 2019 - repositorio.ufpb.br | Synthesis, structural elucidation and in silico studies of novel 2-amino- thiopheneic compounds imidic hybrids were synthesized with determined physicochemical characteristics and confirmed structures through 1H CYP51A1 ( PDB id: 1EA1); (B): ESBT-06 e FTAs ( PDB id: 3SFX |
| 9 | 3qhx | - | https://www.biorxiv.org/content/10.1101/651067v1.abstract | SolXplain: An Explainable Sequence-Based Protein Solubility Predictor | 2019 | R Mall- bioRxiv, 2019 - biorxiv.org | be used as a scoring function to measure the quality of a tree structure Ht at in [13], devise a fast, greedy and iterative algorithm to identify these optimal tree structures We train our XGBoost classifier on top of physio-chemical (global), sequence and structural features extracted |
| 10 | 2n3s | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.3042/full | Solution structure of protein synthesis initiation factor 1 from Pseudomonas aeruginosa | 2016 | Y Hu, A Bernal, JM Bullard, Y Zhang - Protein Science, 2016 - Wiley Online Library | ... from: E. coli (PDB 1AH9), M. tuberculosis (PDB 3I4O), S. pneumoniae (PDB 4QL5), B.thailandensis (PDB 2N3S), T. thermophilus (PDB 1HR0). Secondary structural elements,highlighted in gray, were derived from the PDB structures. The secondary structure elements ... |