We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5TF4 | 2016 | 0 |
| 3N7T | 2010 | 0 |
| 6CY5 | 2018 | 0 |
| 6CXM | 2018 | 0 |
| 5TEW | 2016 | 0 |
| 7K46 | 2020 | 0 |
| 7K47 | 2020 | 0 |
| 3MXU | 2010 | 0 |
| 7K5Z | 2020 | 0 |
| 4XGN | 2015 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4tmd | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5233953/ | Structural basis of the interaction between the putative adhesion-involved and iron-regulated FrpD and FrpC proteins of Neisseria meningitidis | 2017 | E Sviridova, P Rezacova, A Bondar, V Veverka - Scientific , 2017 - ncbi.nlm.nih.gov | ... Structural similarity searches revealed that none of the deposited structures in the Protein DataBank ... Using the DALI server, the best fit was obtained for the crystal structure of the hypotheticalprotein MSMEI_5302 from Mycobacterium smegmatis (PDB: 4TMD), an Rv0999 ... |
| 2 | 3tv2 | 3rd8, 3qbp, 3gtd | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.14782 | Structural, biochemical and biophysical characterization of recombinant human fumarate hydratase | 2019 | MA Ajalla Aleixo, VL Rangel, JK Rustiguel- The FEBS, 2019 - Wiley Online Library | code: 3GTD; [37]), Burkholderia pseudomallei FH (BpFH, PDB code: 3TV2 ; results not (MsFH, PDB code: 3RD8; [38]). The superposition of C atoms between HsFH and the From the structure -based drug design perspective, it is imperative to identify |
| 3 | 3oxk | 3o0m, 3lb5, 3p0t, 3r6f | http://search.proquest.com/openview/a6bee6255f2ecb6acc21ab8e2dbd25bd/1?pq-origsi... | Structural Biology for Drug Design: Applications in Two Systems | 2016 | KM Maize - 2016 - search.proquest.com | ... Structurally, the purple HIT-like clade (4EGU, 3OXK) appears to be highly related to the known Hint proteins, whereas the remaining three HIT-like clades differ from the Hints by the addition of a long 12-15 residue C- terminal helix ... Sequence alignment alone fails to properly separate these two structural subclasses: those that draw the C-terminal helix from the same monomer (2EO4, 3LB5, 3P0T, 3O0M, 3NRD, 3OHE, 3I4S, and 3I24), and those that cross over to ... |
| 4 | 4mpq | - | https://ir.canterbury.ac.nz/handle/10092/13558 | Structural Characterisation of members of the DHDPS/NAL subfamily of proteins | 2017 | C MacDonald - 2017 - ir.canterbury.ac.nz | 2HMC A. tumefaciens HypD 4MPQ B. melitensis HypD p(r) Pair distribution function plot pdb Protein data base This information is displayed using espript software (Robert and Gouet 2014) with secondary structure of E. coli DHDPS being shown along the top |
| 5 | 3rr2 | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.14273/full | Structural characterization and functional analysis of cystathionine synthase: an enzyme involved in the reverse transsulfuration pathway of Bacillus anthracis | 2017 | S Devi, A Rehman, A Syed, KF Tarique- The FEBS, 2017 - Wiley Online Library | Superposition of the BaCBS structure (purple) with the (A) human CBS ( PDB ID: 1M54), (B) PLP-bound OASS ( PDB ID: 2Q3B), and (C) PLP-unbound OASS ( PDB ID: 1O58) structures . (D) Structural superposition of BaCBS (purple) with PDB ID: 1OAS (yellow), PDB ID: 1VE1 |
| 6 | 6c6b | - | https://www.sciencedirect.com/science/article/pii/S0141813020344470 | Structural characterization, antifungal and cytotoxic profiles of quaternized heteropolysaccharide from Anadenanthera colubrina | 2020 | FOS Ribeiro, GS de Arajo, MGA Mendes- International Journal of, 2020 - Elsevier | Volume 165, Part A, 15 December 2020, Pages 279-290. International Journal of Biological Macromolecules. Structural characterization, antifungal and cytotoxic profiles of quaternized heteropolysaccharide from Anadenanthera colubrina The 3D structures of all possible C. neoformans and M. canis targets were obtained from the Protein Data Bank (PDB) (Protein Data Bank, 2019) with the codes 2W3N (Carbonic anhydrase 2), 3Q73 (Farnesyl transferase), 5I33 (Adenylosuccinate synthetase), 5 U29 (Acetyl-coenzyme |
| 7 | 5dld | - | https://scripts.iucr.org/cgi-bin/paper?ir5017 | Structural characterization of a nonhydrolyzing UDP-GlcNAc 2-epimerase from Neisseria meningitidis serogroup A | 2020 | NK Hurlburt, J Guan, H Ong, H Yu, X Chen- Section F: Structural, 2020 - scripts.iucr.org | The 9 9 loop in NmSacA also contains a 310-helix, which is not observed in the E. coli structure . The structures of other epimerases with ligands bound in the active site, including those from Burkholderia vietnam- iensis ( PDB entry 5dld ; 48.7% identity; Seattle Structural |
| 8 | 3lb5 | 3r6f, 3p0t, 3oxk, 3o0m | http://onlinelibrary.wiley.com/doi/10.1111/febs.12330/full | Structural characterization of human histidine triad nucleotide-binding protein 2, a member of the histidine triad superfamily | 2013 | KM Maize, CR Wagner, BC Finzel - FEBS Journal, 2013 - Wiley Online Library | ... conformational change from an 'open' to a 'closed' form during catalysis [eg Protein Data Bank (PDB) code: 3BL9 ... proteins that have not been described or compared in the literature (ie PDB structures: 1XQU, 1Y23, 2EO4, 2OIK, 3ANO, 3IMI, 3I4S, 3124, 3LB5, 3L7X, 3KSV ... |
| 9 | 6wps | - | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc7457611/ | Structural classification of neutralizing antibodies against the SARS-CoV-2 spike receptor-binding domain suggests vaccine and therapeutic strategies | 2020 | CO Barnes, CA Jette, ME Abernathy, KMA Dam- bioRxiv, 2020 - ncbi.nlm.nih.gov | 1g) that were isolated from the same donor 5 . They share structural similarities with each other and with other VH353/short 1) and C144 Fab (from C144-S structure ) aligned on a RBD monomer. ACE2 ( PDB 6M0J; light green surface) is aligned on the same RBD for reference ... Composite model of C135-RBD (blue and gray, respectively) overlaid with the SARS-CoV-2 NAb S309 (sand, PDB 6WPS) and soluble ACE2 |
| 10 | 3pgz | - | http://link.springer.com/protocol/10.1007/978-1-62703-032-8_2 | Structural Diversity Based on Variability in Quaternary Association. A Case Study Involving Eubacterial and Related SSBs | 2012 | SM Arif, M Vijayan - Single-Stranded DNA Binding Proteins, 2012 - Springer | ... structures reported in the literature and/or the coordinates of which have been deposited in the Protein Data Bank (PDB) ( 17 ) form ... in the PDB, but the results are yet to be published: 1. Thermus thermophilus (TtSSB) (PDB code 2cwa). 2. Bartonella henselae (BhSSB) (3pgz). ... |