We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5SDA | 2022 | 0 |
| 5SD9 | 2022 | 0 |
| 5SD8 | 2022 | 0 |
| 5SD7 | 2022 | 0 |
| 5SD6 | 2022 | 0 |
| 5SD5 | 2022 | 0 |
| 5SD4 | 2022 | 0 |
| 5SD3 | 2022 | 0 |
| 5SD2 | 2022 | 0 |
| 5SD1 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3md0 | - | http://www.annualreviews.org/doi/abs/10.1146/annurev-biochem-062708-134043 | Structure-function relationships of the G domain, a canonical switch motif | 2011 | A Wittinghofer, IR Vetter - Annual review of biochemistry, 2011 - annualreviews.org | ... Two structures of putative ArgK proteins have been solved by structural genomics (2www,3md0), which have an ExxG motif instead of DxxG and alpha-helical N- and C-terminal extensions ... |
| 2 | 3o0h | - | http://krishikosh.egranth.ac.in/handle/1/94711 | Structure function studies of enzymes involved in scavenging ROS in Oryza sativa to avoid abiotic stress | 2015 | B Pani - 2015 - krishikosh.egranth.ac.in | ... analysis against PDB (http://www.rcsb.org/) to identify suitable templates for ... The pair-wise 3-D structural alignment and RMSD of the equivalent C atoms, of the model and template was performed using MATRAS (MArkovianTRAnsition of Structure evolution) web ... |
| 3 | 7k43 | 7k4n | https://www.nature.com/articles/s41401-021-00851-w | Structure genomics of SARS-CoV-2 and its Omicron variant: drug design templates for COVID-19 | 2022 | C Wu, W Yin, Y Jiang, HE Xu- Acta Pharmacologica Sinica, 2022 - nature.com | on uncovering structures and functions for structural biology of SARS-CoV-2 and discuss important biological issues that remain to be addressed. We present the examples of structure - ... S2E12 (represented as a cyan surface) binds to the “up” conformation of SARS-CoV-2 S RBD (PDB: 7K4N); S2M11 (represented as a brown surface) binds to the “down” conformation of SARS-CoV-2 S RBD (PDB: 7K43); |
| 4 | 3qh4 | - | https://www.biorxiv.org/content/10.1101/2021.02.23.432567v1.abstract | Structure guided engineering of a cold active esterase expands substrate range though a stabilisation mutation that allows access to a buried water chamber | 2021 | N Noby, R Johnson, J Tyzack, A Embaby, H Saeed- bioRxiv, 2021 - biorxiv.org | to fully open the HerE plug. LipW ( PDB 3QH4 ) (26) has two shorter residues in place PestE ( PDB 2YH2) (28) does not have the plug (Figure 2b). N211 is replaced by a of helical character than the WT suggesting a higher degree of structure for the mutant at this temperature |
| 5 | 3r9r | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2018.0422 | Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping | 2019 | SE Thomas, P Collins, RH James- of the Royal, 2019 - royalsocietypublishing.org | purine biosynthesis in maintaining the viability of cells and differences in the structural architecture of bacterial The crystals are similar to those of a previously determined structure of MabPurC with a monomer in the asymmetric unit (figure 1b) ( PDB 3R9R , Seattle Structural |
| 6 | 5u2w | - | https://www.sciencedirect.com/science/article/pii/S0022283619303675 | Structure-Guided Generation of a Redox-Independent Blue Fluorescent Protein from mBFP | 2019 | PW Seo, ES Jo, SH You, DE Cheong, GJ Kim- Journal of molecular, 2019 - Elsevier | Structure -guided mutagenesis confirmed the residues' role in the fluorescent capacity of mBFP Moreover, we identified another SDR family protein ( PDB ID 5u2w ) from Burkholderia cenocepacia J2315 (BFPbc) with blue fluorescent capacity in the presence of NADPH, which |
| 7 | 4ni5 | - | http://pubs.rsc.org/is/content/articlehtml/2016/cc/c6cc00051g | Structure-guided stereoselectivity inversion of a short-chain dehydrogenase/reductase towards halogenated acetophenones | 2016 | A Li, L Ye, X Yang, C Yang, J Gu, H Yu - Chemical Communications, 2016 - pubs.rsc.org | ... As a powerful method to decipher a possible molecular basis for enzyme properties, structuralcomparison involving the detailed structure alignment has ... using SDRs from Drosophilamelanogaster (31% identity, PDB: 1SNY A) and Brucella suis (48% identity, PDB: 4NI5 A) as ... |
| 8 | 3r9r | - | http://www.postepybiochemii.pl/pdf/3_2016/262-272.pdf | Structure-guided, target-based drug discoveryexploiting genome information from HIV to mycobacterial infections | 2016 | S Malhotra, SE Thomas, MB Ochoa - Postepy , 2016 - postepybiochemii.pl | ... purC structure from Saccharomyces cerevisiae (PDB ID: 1OBD) and in pink is the recentapo-form crystal structure (PDB ID: 3R9R) of purC ... The modelling pipeline begins with identificationof structural homolog(s) using a sequence-structure homology recogni- tion approach ... |
| 9 | 3und | - | http://scripts.iucr.org/cgi-bin/paper?tt5043 | Structure of 2-keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase from Pseudomonas aeruginosa | 2013 | SK Nelson, A Kelleher, G Robinson? - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... Biochemistry, 40, 6326-6334.] ), with 69% sequence similarity, Burkholderia pseudomallei (PDB entry 3und ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), with 64% sequence identity, and Aquifex aeolicus (PDB entry 1fwt ; Ackerman & Gatti ... |
| 10 | 4odj | - | https://scripts.iucr.org/cgi-bin/paper?no5145 | Structure of a critical metabolic enzyme: S-adenosylmethionine synthetase from Cryptosporidium parvum | 2019 | J Ohren, GF Parungao, RE Viola- Section F: Structural Biology, 2019 - scripts.iucr.org | Vagin & Teplyakov, 2010) with the structure of C. hominus MetK ( PDB entry 4odj ) as the ordered in the presence of substrates, is disordered and was not modeled in this structure to form functional tetramers with D2 or 222 symmetry, as illustrated by EcoMetK ( PDB entry 1p7l |